Strain Fitness in Escherichia coli ECRC62 around BNILDI_15545

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmepM and lpxM are separated by 119 nucleotideslpxM and BNILDI_15550 are separated by 88 nucleotides BNILDI_15540: mepM - murein DD-endopeptidase MepM, at 3,120,230 to 3,121,552 mepM BNILDI_15545: lpxM - lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, at 3,121,672 to 3,122,643 lpxM BNILDI_15550: BNILDI_15550 - alpha-mannosidase, at 3,122,732 to 3,125,806 _15550 Position (kb) 3121 3122 3123Strain fitness (log2 ratio) -1 0 1 2at 3120.800 kb on - strand, within mepMat 3120.800 kb on - strand, within mepMat 3120.933 kb on + strand, within mepMat 3121.013 kb on + strand, within mepMat 3121.111 kb on + strand, within mepMat 3121.201 kb on + strand, within mepMat 3121.202 kb on - strand, within mepMat 3121.268 kb on + strand, within mepMat 3121.268 kb on + strand, within mepMat 3121.268 kb on + strand, within mepMat 3121.268 kb on + strand, within mepMat 3121.309 kb on + strand, within mepMat 3121.309 kb on + strand, within mepMat 3121.309 kb on + strand, within mepMat 3121.309 kb on + strand, within mepMat 3121.415 kb on + strand, within mepMat 3121.428 kb on + strandat 3121.472 kb on - strandat 3121.599 kb on - strandat 3122.611 kb on + strandat 3122.728 kb on + strandat 3122.729 kb on - strandat 3123.323 kb on + strand, within BNILDI_15550at 3123.547 kb on - strand, within BNILDI_15550at 3123.613 kb on - strand, within BNILDI_15550

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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3,120,800 - mepM BNILDI_15540 0.43 +1.0
3,120,800 - mepM BNILDI_15540 0.43 -0.9
3,120,933 + mepM BNILDI_15540 0.53 -1.2
3,121,013 + mepM BNILDI_15540 0.59 +0.7
3,121,111 + mepM BNILDI_15540 0.67 +0.9
3,121,201 + mepM BNILDI_15540 0.73 +0.3
3,121,202 - mepM BNILDI_15540 0.73 -0.8
3,121,268 + mepM BNILDI_15540 0.78 +1.3
3,121,268 + mepM BNILDI_15540 0.78 -0.8
3,121,268 + mepM BNILDI_15540 0.78 +0.8
3,121,268 + mepM BNILDI_15540 0.78 +0.9
3,121,309 + mepM BNILDI_15540 0.82 +0.3
3,121,309 + mepM BNILDI_15540 0.82 -1.3
3,121,309 + mepM BNILDI_15540 0.82 -0.4
3,121,309 + mepM BNILDI_15540 0.82 +0.7
3,121,415 + mepM BNILDI_15540 0.90 +0.3
3,121,428 + +2.0
3,121,472 - -0.1
3,121,599 - -1.1
3,122,611 + +1.7
3,122,728 + +0.7
3,122,729 - -0.1
3,123,323 + BNILDI_15550 0.19 +0.7
3,123,547 - BNILDI_15550 0.27 -0.0
3,123,613 - BNILDI_15550 0.29 +0.7

Or see this region's nucleotide sequence