Strain Fitness in Escherichia coli ECRC62 around BNILDI_15400

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflhB and flhA overlap by 8 nucleotidesflhA and flhe overlap by 1 nucleotidesflhe and yecT are separated by 119 nucleotides BNILDI_15395: flhB - flagellar biosynthesis protein FlhB, at 3,095,674 to 3,096,822 flhB BNILDI_15400: flhA - flagellar biosynthesis protein FlhA, at 3,096,815 to 3,098,893 flhA BNILDI_15405: flhe - flagellar protein FlhE, at 3,098,893 to 3,099,285 flhe BNILDI_15410: yecT - Uncharacterized protein YecT, at 3,099,405 to 3,099,893 yecT Position (kb) 3096 3097 3098 3099Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3095.880 kb on + strand, within flhBat 3095.880 kb on + strand, within flhBat 3095.881 kb on - strand, within flhBat 3095.881 kb on - strand, within flhBat 3095.881 kb on - strand, within flhBat 3095.883 kb on + strand, within flhBat 3095.884 kb on - strand, within flhBat 3096.014 kb on + strand, within flhBat 3096.112 kb on - strand, within flhBat 3096.112 kb on - strand, within flhBat 3096.333 kb on + strand, within flhBat 3096.333 kb on + strand, within flhBat 3096.474 kb on + strand, within flhBat 3096.495 kb on - strand, within flhBat 3096.594 kb on + strand, within flhBat 3096.762 kb on + strandat 3096.967 kb on + strandat 3096.968 kb on - strandat 3097.054 kb on + strand, within flhAat 3097.055 kb on - strand, within flhAat 3097.057 kb on + strand, within flhAat 3097.057 kb on + strand, within flhAat 3097.057 kb on + strand, within flhAat 3097.078 kb on + strand, within flhAat 3097.078 kb on + strand, within flhAat 3097.079 kb on - strand, within flhAat 3097.188 kb on + strand, within flhAat 3097.188 kb on + strand, within flhAat 3097.188 kb on + strand, within flhAat 3097.189 kb on - strand, within flhAat 3097.192 kb on + strand, within flhAat 3097.193 kb on - strand, within flhAat 3097.193 kb on - strand, within flhAat 3097.228 kb on + strand, within flhAat 3097.291 kb on + strand, within flhAat 3097.327 kb on + strand, within flhAat 3097.421 kb on - strand, within flhAat 3097.421 kb on - strand, within flhAat 3097.421 kb on - strand, within flhAat 3097.538 kb on + strand, within flhAat 3097.540 kb on + strand, within flhAat 3097.541 kb on - strand, within flhAat 3097.676 kb on - strand, within flhAat 3097.687 kb on + strand, within flhAat 3097.695 kb on + strand, within flhAat 3097.853 kb on - strand, within flhAat 3097.855 kb on + strand, within flhAat 3097.884 kb on + strand, within flhAat 3097.972 kb on + strand, within flhAat 3097.974 kb on + strand, within flhAat 3098.223 kb on + strand, within flhAat 3098.291 kb on - strand, within flhAat 3098.644 kb on - strand, within flhAat 3098.646 kb on + strand, within flhAat 3098.784 kb on + strandat 3098.820 kb on + strandat 3098.860 kb on + strandat 3098.892 kb on - strandat 3098.892 kb on - strandat 3098.904 kb on - strandat 3098.912 kb on + strandat 3098.912 kb on + strandat 3098.915 kb on + strandat 3098.916 kb on - strandat 3098.968 kb on - strand, within flheat 3098.968 kb on - strand, within flheat 3098.968 kb on - strand, within flheat 3098.968 kb on - strand, within flheat 3098.973 kb on - strand, within flheat 3098.979 kb on + strand, within flheat 3099.252 kb on - strandat 3099.314 kb on - strandat 3099.319 kb on + strandat 3099.371 kb on + strandat 3099.487 kb on - strand, within yecTat 3099.495 kb on - strand, within yecTat 3099.825 kb on + strand, within yecTat 3099.826 kb on - strand, within yecTat 3099.826 kb on - strand, within yecTat 3099.874 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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3,095,880 + flhB BNILDI_15395 0.18 +1.7
3,095,880 + flhB BNILDI_15395 0.18 +0.9
3,095,881 - flhB BNILDI_15395 0.18 -0.3
3,095,881 - flhB BNILDI_15395 0.18 +2.0
3,095,881 - flhB BNILDI_15395 0.18 -1.1
3,095,883 + flhB BNILDI_15395 0.18 -0.0
3,095,884 - flhB BNILDI_15395 0.18 +1.4
3,096,014 + flhB BNILDI_15395 0.30 +1.9
3,096,112 - flhB BNILDI_15395 0.38 +0.6
3,096,112 - flhB BNILDI_15395 0.38 +1.1
3,096,333 + flhB BNILDI_15395 0.57 +0.9
3,096,333 + flhB BNILDI_15395 0.57 -0.1
3,096,474 + flhB BNILDI_15395 0.70 +3.0
3,096,495 - flhB BNILDI_15395 0.71 +0.4
3,096,594 + flhB BNILDI_15395 0.80 -1.7
3,096,762 + +0.8
3,096,967 + +0.4
3,096,968 - +1.7
3,097,054 + flhA BNILDI_15400 0.11 +3.9
3,097,055 - flhA BNILDI_15400 0.12 -0.9
3,097,057 + flhA BNILDI_15400 0.12 +0.7
3,097,057 + flhA BNILDI_15400 0.12 +1.6
3,097,057 + flhA BNILDI_15400 0.12 +1.6
3,097,078 + flhA BNILDI_15400 0.13 -0.6
3,097,078 + flhA BNILDI_15400 0.13 +0.9
3,097,079 - flhA BNILDI_15400 0.13 +2.4
3,097,188 + flhA BNILDI_15400 0.18 +0.6
3,097,188 + flhA BNILDI_15400 0.18 +1.7
3,097,188 + flhA BNILDI_15400 0.18 +0.5
3,097,189 - flhA BNILDI_15400 0.18 +1.5
3,097,192 + flhA BNILDI_15400 0.18 +2.6
3,097,193 - flhA BNILDI_15400 0.18 +1.0
3,097,193 - flhA BNILDI_15400 0.18 +0.7
3,097,228 + flhA BNILDI_15400 0.20 +0.4
3,097,291 + flhA BNILDI_15400 0.23 +5.4
3,097,327 + flhA BNILDI_15400 0.25 -0.8
3,097,421 - flhA BNILDI_15400 0.29 +2.7
3,097,421 - flhA BNILDI_15400 0.29 +1.1
3,097,421 - flhA BNILDI_15400 0.29 -1.9
3,097,538 + flhA BNILDI_15400 0.35 +0.5
3,097,540 + flhA BNILDI_15400 0.35 +1.7
3,097,541 - flhA BNILDI_15400 0.35 +2.1
3,097,676 - flhA BNILDI_15400 0.41 +1.1
3,097,687 + flhA BNILDI_15400 0.42 -0.6
3,097,695 + flhA BNILDI_15400 0.42 +1.0
3,097,853 - flhA BNILDI_15400 0.50 -0.3
3,097,855 + flhA BNILDI_15400 0.50 +1.7
3,097,884 + flhA BNILDI_15400 0.51 +1.9
3,097,972 + flhA BNILDI_15400 0.56 +0.4
3,097,974 + flhA BNILDI_15400 0.56 +2.0
3,098,223 + flhA BNILDI_15400 0.68 +1.1
3,098,291 - flhA BNILDI_15400 0.71 +1.3
3,098,644 - flhA BNILDI_15400 0.88 +0.7
3,098,646 + flhA BNILDI_15400 0.88 -0.9
3,098,784 + +1.4
3,098,820 + +2.3
3,098,860 + -0.6
3,098,892 - -0.2
3,098,892 - +0.5
3,098,904 - -1.0
3,098,912 + +1.1
3,098,912 + -1.7
3,098,915 + -1.1
3,098,916 - +0.1
3,098,968 - flhe BNILDI_15405 0.19 -1.1
3,098,968 - flhe BNILDI_15405 0.19 +1.7
3,098,968 - flhe BNILDI_15405 0.19 +0.1
3,098,968 - flhe BNILDI_15405 0.19 +0.1
3,098,973 - flhe BNILDI_15405 0.20 +0.7
3,098,979 + flhe BNILDI_15405 0.22 -0.3
3,099,252 - +0.1
3,099,314 - +0.6
3,099,319 + -1.0
3,099,371 + -1.4
3,099,487 - yecT BNILDI_15410 0.17 +0.3
3,099,495 - yecT BNILDI_15410 0.18 +0.4
3,099,825 + yecT BNILDI_15410 0.86 +0.4
3,099,826 - yecT BNILDI_15410 0.86 +0.1
3,099,826 - yecT BNILDI_15410 0.86 +0.6
3,099,874 - -0.7

Or see this region's nucleotide sequence