Strain Fitness in Escherichia coli ECRC62 around BNILDI_15395

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcheY and cheZ are separated by 10 nucleotidescheZ and flhB are separated by 201 nucleotidesflhB and flhA overlap by 8 nucleotides BNILDI_15385: cheY - chemotaxis regulatory protein CheY, at 3,094,428 to 3,094,817 cheY BNILDI_15390: cheZ - protein phosphatase CheZ, at 3,094,828 to 3,095,472 cheZ BNILDI_15395: flhB - flagellar biosynthesis protein FlhB, at 3,095,674 to 3,096,822 flhB BNILDI_15400: flhA - flagellar biosynthesis protein FlhA, at 3,096,815 to 3,098,893 flhA Position (kb) 3095 3096 3097Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3094.760 kb on + strand, within cheYat 3094.993 kb on + strand, within cheZat 3094.993 kb on + strand, within cheZat 3094.996 kb on + strand, within cheZat 3094.996 kb on + strand, within cheZat 3094.996 kb on + strand, within cheZat 3094.996 kb on + strand, within cheZat 3094.996 kb on + strand, within cheZat 3094.996 kb on + strand, within cheZat 3094.997 kb on - strand, within cheZat 3095.199 kb on + strand, within cheZat 3095.208 kb on + strand, within cheZat 3095.478 kb on - strandat 3095.554 kb on + strandat 3095.554 kb on + strandat 3095.555 kb on - strandat 3095.650 kb on - strandat 3095.650 kb on - strandat 3095.650 kb on - strandat 3095.650 kb on - strandat 3095.652 kb on + strandat 3095.805 kb on + strand, within flhBat 3095.880 kb on + strand, within flhBat 3095.880 kb on + strand, within flhBat 3095.881 kb on - strand, within flhBat 3095.881 kb on - strand, within flhBat 3095.881 kb on - strand, within flhBat 3095.883 kb on + strand, within flhBat 3095.884 kb on - strand, within flhBat 3096.014 kb on + strand, within flhBat 3096.112 kb on - strand, within flhBat 3096.112 kb on - strand, within flhBat 3096.333 kb on + strand, within flhBat 3096.333 kb on + strand, within flhBat 3096.474 kb on + strand, within flhBat 3096.495 kb on - strand, within flhBat 3096.594 kb on + strand, within flhBat 3096.762 kb on + strandat 3096.967 kb on + strandat 3096.968 kb on - strandat 3097.054 kb on + strand, within flhAat 3097.055 kb on - strand, within flhAat 3097.057 kb on + strand, within flhAat 3097.057 kb on + strand, within flhAat 3097.057 kb on + strand, within flhAat 3097.078 kb on + strand, within flhAat 3097.078 kb on + strand, within flhAat 3097.079 kb on - strand, within flhAat 3097.188 kb on + strand, within flhAat 3097.188 kb on + strand, within flhAat 3097.188 kb on + strand, within flhAat 3097.189 kb on - strand, within flhAat 3097.192 kb on + strand, within flhAat 3097.193 kb on - strand, within flhAat 3097.193 kb on - strand, within flhAat 3097.228 kb on + strand, within flhAat 3097.291 kb on + strand, within flhAat 3097.327 kb on + strand, within flhAat 3097.421 kb on - strand, within flhAat 3097.421 kb on - strand, within flhAat 3097.421 kb on - strand, within flhAat 3097.538 kb on + strand, within flhAat 3097.540 kb on + strand, within flhAat 3097.541 kb on - strand, within flhAat 3097.676 kb on - strand, within flhAat 3097.687 kb on + strand, within flhAat 3097.695 kb on + strand, within flhA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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3,094,760 + cheY BNILDI_15385 0.85 -0.3
3,094,993 + cheZ BNILDI_15390 0.26 -0.6
3,094,993 + cheZ BNILDI_15390 0.26 +0.1
3,094,996 + cheZ BNILDI_15390 0.26 +0.1
3,094,996 + cheZ BNILDI_15390 0.26 +1.7
3,094,996 + cheZ BNILDI_15390 0.26 -1.4
3,094,996 + cheZ BNILDI_15390 0.26 -1.3
3,094,996 + cheZ BNILDI_15390 0.26 +0.3
3,094,996 + cheZ BNILDI_15390 0.26 +0.1
3,094,997 - cheZ BNILDI_15390 0.26 -1.6
3,095,199 + cheZ BNILDI_15390 0.58 -1.3
3,095,208 + cheZ BNILDI_15390 0.59 +0.7
3,095,478 - -1.0
3,095,554 + -0.4
3,095,554 + +1.0
3,095,555 - -2.1
3,095,650 - -0.9
3,095,650 - -1.3
3,095,650 - -0.3
3,095,650 - +0.9
3,095,652 + +0.1
3,095,805 + flhB BNILDI_15395 0.11 +0.9
3,095,880 + flhB BNILDI_15395 0.18 +1.7
3,095,880 + flhB BNILDI_15395 0.18 +0.9
3,095,881 - flhB BNILDI_15395 0.18 -0.3
3,095,881 - flhB BNILDI_15395 0.18 +2.0
3,095,881 - flhB BNILDI_15395 0.18 -1.1
3,095,883 + flhB BNILDI_15395 0.18 -0.0
3,095,884 - flhB BNILDI_15395 0.18 +1.4
3,096,014 + flhB BNILDI_15395 0.30 +1.9
3,096,112 - flhB BNILDI_15395 0.38 +0.6
3,096,112 - flhB BNILDI_15395 0.38 +1.1
3,096,333 + flhB BNILDI_15395 0.57 +0.9
3,096,333 + flhB BNILDI_15395 0.57 -0.1
3,096,474 + flhB BNILDI_15395 0.70 +3.0
3,096,495 - flhB BNILDI_15395 0.71 +0.4
3,096,594 + flhB BNILDI_15395 0.80 -1.7
3,096,762 + +0.8
3,096,967 + +0.4
3,096,968 - +1.7
3,097,054 + flhA BNILDI_15400 0.11 +3.9
3,097,055 - flhA BNILDI_15400 0.12 -0.9
3,097,057 + flhA BNILDI_15400 0.12 +0.7
3,097,057 + flhA BNILDI_15400 0.12 +1.6
3,097,057 + flhA BNILDI_15400 0.12 +1.6
3,097,078 + flhA BNILDI_15400 0.13 -0.6
3,097,078 + flhA BNILDI_15400 0.13 +0.9
3,097,079 - flhA BNILDI_15400 0.13 +2.4
3,097,188 + flhA BNILDI_15400 0.18 +0.6
3,097,188 + flhA BNILDI_15400 0.18 +1.7
3,097,188 + flhA BNILDI_15400 0.18 +0.5
3,097,189 - flhA BNILDI_15400 0.18 +1.5
3,097,192 + flhA BNILDI_15400 0.18 +2.6
3,097,193 - flhA BNILDI_15400 0.18 +1.0
3,097,193 - flhA BNILDI_15400 0.18 +0.7
3,097,228 + flhA BNILDI_15400 0.20 +0.4
3,097,291 + flhA BNILDI_15400 0.23 +5.4
3,097,327 + flhA BNILDI_15400 0.25 -0.8
3,097,421 - flhA BNILDI_15400 0.29 +2.7
3,097,421 - flhA BNILDI_15400 0.29 +1.1
3,097,421 - flhA BNILDI_15400 0.29 -1.9
3,097,538 + flhA BNILDI_15400 0.35 +0.5
3,097,540 + flhA BNILDI_15400 0.35 +1.7
3,097,541 - flhA BNILDI_15400 0.35 +2.1
3,097,676 - flhA BNILDI_15400 0.41 +1.1
3,097,687 + flhA BNILDI_15400 0.42 -0.6
3,097,695 + flhA BNILDI_15400 0.42 +1.0

Or see this region's nucleotide sequence