Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cheY and cheZ are separated by 10 nucleotides cheZ and flhB are separated by 201 nucleotides flhB and flhA overlap by 8 nucleotides
BNILDI_15385: cheY - chemotaxis regulatory protein CheY, at 3,094,428 to 3,094,817
cheY
BNILDI_15390: cheZ - protein phosphatase CheZ, at 3,094,828 to 3,095,472
cheZ
BNILDI_15395: flhB - flagellar biosynthesis protein FlhB, at 3,095,674 to 3,096,822
flhB
BNILDI_15400: flhA - flagellar biosynthesis protein FlhA, at 3,096,815 to 3,098,893
flhA
Position (kb)
3095
3096
3097 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3094.760 kb on + strand, within cheY at 3094.993 kb on + strand, within cheZ at 3094.993 kb on + strand, within cheZ at 3094.996 kb on + strand, within cheZ at 3094.996 kb on + strand, within cheZ at 3094.996 kb on + strand, within cheZ at 3094.996 kb on + strand, within cheZ at 3094.996 kb on + strand, within cheZ at 3094.996 kb on + strand, within cheZ at 3094.997 kb on - strand, within cheZ at 3095.199 kb on + strand, within cheZ at 3095.208 kb on + strand, within cheZ at 3095.478 kb on - strand at 3095.554 kb on + strand at 3095.554 kb on + strand at 3095.555 kb on - strand at 3095.650 kb on - strand at 3095.650 kb on - strand at 3095.650 kb on - strand at 3095.650 kb on - strand at 3095.652 kb on + strand at 3095.805 kb on + strand, within flhB at 3095.880 kb on + strand, within flhB at 3095.880 kb on + strand, within flhB at 3095.881 kb on - strand, within flhB at 3095.881 kb on - strand, within flhB at 3095.881 kb on - strand, within flhB at 3095.883 kb on + strand, within flhB at 3095.884 kb on - strand, within flhB at 3096.014 kb on + strand, within flhB at 3096.112 kb on - strand, within flhB at 3096.112 kb on - strand, within flhB at 3096.333 kb on + strand, within flhB at 3096.333 kb on + strand, within flhB at 3096.474 kb on + strand, within flhB at 3096.495 kb on - strand, within flhB at 3096.594 kb on + strand, within flhB at 3096.762 kb on + strand at 3096.967 kb on + strand at 3096.968 kb on - strand at 3097.054 kb on + strand, within flhA at 3097.055 kb on - strand, within flhA at 3097.057 kb on + strand, within flhA at 3097.057 kb on + strand, within flhA at 3097.057 kb on + strand, within flhA at 3097.078 kb on + strand, within flhA at 3097.078 kb on + strand, within flhA at 3097.079 kb on - strand, within flhA at 3097.188 kb on + strand, within flhA at 3097.188 kb on + strand, within flhA at 3097.188 kb on + strand, within flhA at 3097.189 kb on - strand, within flhA at 3097.192 kb on + strand, within flhA at 3097.193 kb on - strand, within flhA at 3097.193 kb on - strand, within flhA at 3097.228 kb on + strand, within flhA at 3097.291 kb on + strand, within flhA at 3097.327 kb on + strand, within flhA at 3097.421 kb on - strand, within flhA at 3097.421 kb on - strand, within flhA at 3097.421 kb on - strand, within flhA at 3097.538 kb on + strand, within flhA at 3097.540 kb on + strand, within flhA at 3097.541 kb on - strand, within flhA at 3097.676 kb on - strand, within flhA at 3097.687 kb on + strand, within flhA at 3097.695 kb on + strand, within flhA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 3,094,760 + cheY BNILDI_15385 0.85 -0.3 3,094,993 + cheZ BNILDI_15390 0.26 -0.6 3,094,993 + cheZ BNILDI_15390 0.26 +0.1 3,094,996 + cheZ BNILDI_15390 0.26 +0.1 3,094,996 + cheZ BNILDI_15390 0.26 +1.7 3,094,996 + cheZ BNILDI_15390 0.26 -1.4 3,094,996 + cheZ BNILDI_15390 0.26 -1.3 3,094,996 + cheZ BNILDI_15390 0.26 +0.3 3,094,996 + cheZ BNILDI_15390 0.26 +0.1 3,094,997 - cheZ BNILDI_15390 0.26 -1.6 3,095,199 + cheZ BNILDI_15390 0.58 -1.3 3,095,208 + cheZ BNILDI_15390 0.59 +0.7 3,095,478 - -1.0 3,095,554 + -0.4 3,095,554 + +1.0 3,095,555 - -2.1 3,095,650 - -0.9 3,095,650 - -1.3 3,095,650 - -0.3 3,095,650 - +0.9 3,095,652 + +0.1 3,095,805 + flhB BNILDI_15395 0.11 +0.9 3,095,880 + flhB BNILDI_15395 0.18 +1.7 3,095,880 + flhB BNILDI_15395 0.18 +0.9 3,095,881 - flhB BNILDI_15395 0.18 -0.3 3,095,881 - flhB BNILDI_15395 0.18 +2.0 3,095,881 - flhB BNILDI_15395 0.18 -1.1 3,095,883 + flhB BNILDI_15395 0.18 -0.0 3,095,884 - flhB BNILDI_15395 0.18 +1.4 3,096,014 + flhB BNILDI_15395 0.30 +1.9 3,096,112 - flhB BNILDI_15395 0.38 +0.6 3,096,112 - flhB BNILDI_15395 0.38 +1.1 3,096,333 + flhB BNILDI_15395 0.57 +0.9 3,096,333 + flhB BNILDI_15395 0.57 -0.1 3,096,474 + flhB BNILDI_15395 0.70 +3.0 3,096,495 - flhB BNILDI_15395 0.71 +0.4 3,096,594 + flhB BNILDI_15395 0.80 -1.7 3,096,762 + +0.8 3,096,967 + +0.4 3,096,968 - +1.7 3,097,054 + flhA BNILDI_15400 0.11 +3.9 3,097,055 - flhA BNILDI_15400 0.12 -0.9 3,097,057 + flhA BNILDI_15400 0.12 +0.7 3,097,057 + flhA BNILDI_15400 0.12 +1.6 3,097,057 + flhA BNILDI_15400 0.12 +1.6 3,097,078 + flhA BNILDI_15400 0.13 -0.6 3,097,078 + flhA BNILDI_15400 0.13 +0.9 3,097,079 - flhA BNILDI_15400 0.13 +2.4 3,097,188 + flhA BNILDI_15400 0.18 +0.6 3,097,188 + flhA BNILDI_15400 0.18 +1.7 3,097,188 + flhA BNILDI_15400 0.18 +0.5 3,097,189 - flhA BNILDI_15400 0.18 +1.5 3,097,192 + flhA BNILDI_15400 0.18 +2.6 3,097,193 - flhA BNILDI_15400 0.18 +1.0 3,097,193 - flhA BNILDI_15400 0.18 +0.7 3,097,228 + flhA BNILDI_15400 0.20 +0.4 3,097,291 + flhA BNILDI_15400 0.23 +5.4 3,097,327 + flhA BNILDI_15400 0.25 -0.8 3,097,421 - flhA BNILDI_15400 0.29 +2.7 3,097,421 - flhA BNILDI_15400 0.29 +1.1 3,097,421 - flhA BNILDI_15400 0.29 -1.9 3,097,538 + flhA BNILDI_15400 0.35 +0.5 3,097,540 + flhA BNILDI_15400 0.35 +1.7 3,097,541 - flhA BNILDI_15400 0.35 +2.1 3,097,676 - flhA BNILDI_15400 0.41 +1.1 3,097,687 + flhA BNILDI_15400 0.42 -0.6 3,097,695 + flhA BNILDI_15400 0.42 +1.0
Or see this region's nucleotide sequence