Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliF and fliE are separated by 214 nucleotides fliE and yedK are separated by 392 nucleotides yedK and yedF are separated by 106 nucleotides yedF and yedE overlap by 4 nucleotides
BNILDI_15135: fliF - flagellar M-ring protein FliF, at 3,049,810 to 3,051,468
fliF
BNILDI_15140: fliE - flagellar hook-basal body complex protein FliE, at 3,051,683 to 3,051,997
fliE
BNILDI_15145: yedK - Abasic site processing protein YedK, at 3,052,390 to 3,053,058
yedK
BNILDI_15150: yedF - sulfurtransferase-like selenium metabolism protein YedF, at 3,053,165 to 3,053,398
yedF
BNILDI_15155: yedE - selenium metabolism membrane protein YedE/FdhT, at 3,053,395 to 3,054,600
yedE
Position (kb)
3052
3053
3054 Strain fitness (log2 ratio)
-1
0
1
2 at 3051.564 kb on - strand at 3051.564 kb on - strand at 3051.641 kb on + strand at 3051.778 kb on + strand, within fliE at 3051.778 kb on + strand, within fliE at 3051.949 kb on + strand, within fliE at 3051.952 kb on + strand, within fliE at 3051.953 kb on - strand, within fliE at 3051.995 kb on + strand at 3052.016 kb on - strand at 3052.020 kb on - strand at 3052.020 kb on - strand at 3052.123 kb on - strand at 3052.123 kb on - strand at 3052.125 kb on - strand at 3052.219 kb on + strand at 3052.249 kb on + strand at 3052.295 kb on - strand at 3052.329 kb on + strand at 3052.339 kb on - strand at 3052.342 kb on - strand at 3052.375 kb on + strand at 3052.588 kb on + strand, within yedK at 3052.712 kb on + strand, within yedK at 3052.804 kb on - strand, within yedK at 3052.952 kb on + strand, within yedK at 3052.983 kb on + strand, within yedK at 3053.018 kb on + strand at 3053.019 kb on - strand at 3053.058 kb on + strand at 3053.058 kb on + strand at 3053.059 kb on - strand at 3053.113 kb on - strand at 3053.113 kb on - strand at 3053.167 kb on - strand at 3053.167 kb on - strand at 3053.177 kb on + strand at 3053.254 kb on + strand, within yedF at 3053.390 kb on - strand at 3053.489 kb on + strand at 3053.490 kb on - strand at 3053.490 kb on - strand at 3053.585 kb on + strand, within yedE at 3053.714 kb on - strand, within yedE at 3053.767 kb on + strand, within yedE at 3053.773 kb on + strand, within yedE at 3053.777 kb on + strand, within yedE at 3053.809 kb on - strand, within yedE at 3053.839 kb on - strand, within yedE
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 3,051,564 - -0.2 3,051,564 - +1.8 3,051,641 + -1.3 3,051,778 + fliE BNILDI_15140 0.30 +0.1 3,051,778 + fliE BNILDI_15140 0.30 -1.0 3,051,949 + fliE BNILDI_15140 0.84 +2.2 3,051,952 + fliE BNILDI_15140 0.85 +2.5 3,051,953 - fliE BNILDI_15140 0.86 +0.8 3,051,995 + -1.4 3,052,016 - +0.3 3,052,020 - +0.3 3,052,020 - +0.1 3,052,123 - +1.8 3,052,123 - -1.2 3,052,125 - -0.3 3,052,219 + -1.1 3,052,249 + -0.1 3,052,295 - +1.2 3,052,329 + +0.2 3,052,339 - +1.0 3,052,342 - +0.8 3,052,375 + +0.1 3,052,588 + yedK BNILDI_15145 0.30 -0.2 3,052,712 + yedK BNILDI_15145 0.48 +1.0 3,052,804 - yedK BNILDI_15145 0.62 -0.8 3,052,952 + yedK BNILDI_15145 0.84 +0.3 3,052,983 + yedK BNILDI_15145 0.89 +1.3 3,053,018 + +0.1 3,053,019 - +0.3 3,053,058 + -0.6 3,053,058 + +0.8 3,053,059 - +0.8 3,053,113 - -0.7 3,053,113 - +1.8 3,053,167 - -0.7 3,053,167 - +0.0 3,053,177 + -0.6 3,053,254 + yedF BNILDI_15150 0.38 +0.6 3,053,390 - -0.4 3,053,489 + -0.4 3,053,490 - +0.3 3,053,490 - -0.4 3,053,585 + yedE BNILDI_15155 0.16 +0.8 3,053,714 - yedE BNILDI_15155 0.26 +0.9 3,053,767 + yedE BNILDI_15155 0.31 +0.5 3,053,773 + yedE BNILDI_15155 0.31 -0.1 3,053,777 + yedE BNILDI_15155 0.32 -0.8 3,053,809 - yedE BNILDI_15155 0.34 +1.8 3,053,839 - yedE BNILDI_15155 0.37 -1.1
Or see this region's nucleotide sequence