Strain Fitness in Escherichia coli ECRC62 around BNILDI_15145

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliF and fliE are separated by 214 nucleotidesfliE and yedK are separated by 392 nucleotidesyedK and yedF are separated by 106 nucleotidesyedF and yedE overlap by 4 nucleotides BNILDI_15135: fliF - flagellar M-ring protein FliF, at 3,049,810 to 3,051,468 fliF BNILDI_15140: fliE - flagellar hook-basal body complex protein FliE, at 3,051,683 to 3,051,997 fliE BNILDI_15145: yedK - Abasic site processing protein YedK, at 3,052,390 to 3,053,058 yedK BNILDI_15150: yedF - sulfurtransferase-like selenium metabolism protein YedF, at 3,053,165 to 3,053,398 yedF BNILDI_15155: yedE - selenium metabolism membrane protein YedE/FdhT, at 3,053,395 to 3,054,600 yedE Position (kb) 3052 3053 3054Strain fitness (log2 ratio) -1 0 1 2at 3051.564 kb on - strandat 3051.564 kb on - strandat 3051.641 kb on + strandat 3051.778 kb on + strand, within fliEat 3051.778 kb on + strand, within fliEat 3051.949 kb on + strand, within fliEat 3051.952 kb on + strand, within fliEat 3051.953 kb on - strand, within fliEat 3051.995 kb on + strandat 3052.016 kb on - strandat 3052.020 kb on - strandat 3052.020 kb on - strandat 3052.123 kb on - strandat 3052.123 kb on - strandat 3052.125 kb on - strandat 3052.219 kb on + strandat 3052.249 kb on + strandat 3052.295 kb on - strandat 3052.329 kb on + strandat 3052.339 kb on - strandat 3052.342 kb on - strandat 3052.375 kb on + strandat 3052.588 kb on + strand, within yedKat 3052.712 kb on + strand, within yedKat 3052.804 kb on - strand, within yedKat 3052.952 kb on + strand, within yedKat 3052.983 kb on + strand, within yedKat 3053.018 kb on + strandat 3053.019 kb on - strandat 3053.058 kb on + strandat 3053.058 kb on + strandat 3053.059 kb on - strandat 3053.113 kb on - strandat 3053.113 kb on - strandat 3053.167 kb on - strandat 3053.167 kb on - strandat 3053.177 kb on + strandat 3053.254 kb on + strand, within yedFat 3053.390 kb on - strandat 3053.489 kb on + strandat 3053.490 kb on - strandat 3053.490 kb on - strandat 3053.585 kb on + strand, within yedEat 3053.714 kb on - strand, within yedEat 3053.767 kb on + strand, within yedEat 3053.773 kb on + strand, within yedEat 3053.777 kb on + strand, within yedEat 3053.809 kb on - strand, within yedEat 3053.839 kb on - strand, within yedE

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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3,051,564 - -0.2
3,051,564 - +1.8
3,051,641 + -1.3
3,051,778 + fliE BNILDI_15140 0.30 +0.1
3,051,778 + fliE BNILDI_15140 0.30 -1.0
3,051,949 + fliE BNILDI_15140 0.84 +2.2
3,051,952 + fliE BNILDI_15140 0.85 +2.5
3,051,953 - fliE BNILDI_15140 0.86 +0.8
3,051,995 + -1.4
3,052,016 - +0.3
3,052,020 - +0.3
3,052,020 - +0.1
3,052,123 - +1.8
3,052,123 - -1.2
3,052,125 - -0.3
3,052,219 + -1.1
3,052,249 + -0.1
3,052,295 - +1.2
3,052,329 + +0.2
3,052,339 - +1.0
3,052,342 - +0.8
3,052,375 + +0.1
3,052,588 + yedK BNILDI_15145 0.30 -0.2
3,052,712 + yedK BNILDI_15145 0.48 +1.0
3,052,804 - yedK BNILDI_15145 0.62 -0.8
3,052,952 + yedK BNILDI_15145 0.84 +0.3
3,052,983 + yedK BNILDI_15145 0.89 +1.3
3,053,018 + +0.1
3,053,019 - +0.3
3,053,058 + -0.6
3,053,058 + +0.8
3,053,059 - +0.8
3,053,113 - -0.7
3,053,113 - +1.8
3,053,167 - -0.7
3,053,167 - +0.0
3,053,177 + -0.6
3,053,254 + yedF BNILDI_15150 0.38 +0.6
3,053,390 - -0.4
3,053,489 + -0.4
3,053,490 - +0.3
3,053,490 - -0.4
3,053,585 + yedE BNILDI_15155 0.16 +0.8
3,053,714 - yedE BNILDI_15155 0.26 +0.9
3,053,767 + yedE BNILDI_15155 0.31 +0.5
3,053,773 + yedE BNILDI_15155 0.31 -0.1
3,053,777 + yedE BNILDI_15155 0.32 -0.8
3,053,809 - yedE BNILDI_15155 0.34 +1.8
3,053,839 - yedE BNILDI_15155 0.37 -1.1

Or see this region's nucleotide sequence