Strain Fitness in Escherichia coli ECRC62 around BNILDI_15140

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliF and fliE are separated by 214 nucleotidesfliE and yedK are separated by 392 nucleotides BNILDI_15135: fliF - flagellar M-ring protein FliF, at 3,049,810 to 3,051,468 fliF BNILDI_15140: fliE - flagellar hook-basal body complex protein FliE, at 3,051,683 to 3,051,997 fliE BNILDI_15145: yedK - Abasic site processing protein YedK, at 3,052,390 to 3,053,058 yedK Position (kb) 3051 3052Strain fitness (log2 ratio) -1 0 1 2at 3050.694 kb on + strand, within fliFat 3050.945 kb on - strand, within fliFat 3051.028 kb on + strand, within fliFat 3051.133 kb on + strand, within fliFat 3051.564 kb on - strandat 3051.564 kb on - strandat 3051.641 kb on + strandat 3051.778 kb on + strand, within fliEat 3051.778 kb on + strand, within fliEat 3051.949 kb on + strand, within fliEat 3051.952 kb on + strand, within fliEat 3051.953 kb on - strand, within fliEat 3051.995 kb on + strandat 3052.016 kb on - strandat 3052.020 kb on - strandat 3052.020 kb on - strandat 3052.123 kb on - strandat 3052.123 kb on - strandat 3052.125 kb on - strandat 3052.219 kb on + strandat 3052.249 kb on + strandat 3052.295 kb on - strandat 3052.329 kb on + strandat 3052.339 kb on - strandat 3052.342 kb on - strandat 3052.375 kb on + strandat 3052.588 kb on + strand, within yedKat 3052.712 kb on + strand, within yedKat 3052.804 kb on - strand, within yedKat 3052.952 kb on + strand, within yedKat 3052.983 kb on + strand, within yedK

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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3,050,694 + fliF BNILDI_15135 0.53 +2.1
3,050,945 - fliF BNILDI_15135 0.68 +2.6
3,051,028 + fliF BNILDI_15135 0.73 +0.4
3,051,133 + fliF BNILDI_15135 0.80 +1.6
3,051,564 - -0.2
3,051,564 - +1.8
3,051,641 + -1.3
3,051,778 + fliE BNILDI_15140 0.30 +0.1
3,051,778 + fliE BNILDI_15140 0.30 -1.0
3,051,949 + fliE BNILDI_15140 0.84 +2.2
3,051,952 + fliE BNILDI_15140 0.85 +2.5
3,051,953 - fliE BNILDI_15140 0.86 +0.8
3,051,995 + -1.4
3,052,016 - +0.3
3,052,020 - +0.3
3,052,020 - +0.1
3,052,123 - +1.8
3,052,123 - -1.2
3,052,125 - -0.3
3,052,219 + -1.1
3,052,249 + -0.1
3,052,295 - +1.2
3,052,329 + +0.2
3,052,339 - +1.0
3,052,342 - +0.8
3,052,375 + +0.1
3,052,588 + yedK BNILDI_15145 0.30 -0.2
3,052,712 + yedK BNILDI_15145 0.48 +1.0
3,052,804 - yedK BNILDI_15145 0.62 -0.8
3,052,952 + yedK BNILDI_15145 0.84 +0.3
3,052,983 + yedK BNILDI_15145 0.89 +1.3

Or see this region's nucleotide sequence