Strain Fitness in Escherichia coli ECRC62 around BNILDI_15110

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliM and fliL are separated by 4 nucleotidesfliL and fliK are separated by 104 nucleotidesfliK and fliJ overlap by 4 nucleotidesfliJ and fliI are separated by 18 nucleotides BNILDI_15100: fliM - flagellar motor switch protein FliM, at 3,043,606 to 3,044,610 fliM BNILDI_15105: fliL - flagellar basal body-associated protein FliL, at 3,044,615 to 3,045,079 fliL BNILDI_15110: fliK - flagellar hook length control protein FliK, at 3,045,184 to 3,046,311 fliK BNILDI_15115: fliJ - flagella biosynthesis chaperone FliJ, at 3,046,308 to 3,046,751 fliJ BNILDI_15120: fliI - flagellum-specific ATP synthase FliI, at 3,046,770 to 3,048,143 fliI Position (kb) 3045 3046 3047Strain fitness (log2 ratio) -1 0 1 2at 3044.375 kb on - strand, within fliMat 3044.599 kb on - strandat 3044.637 kb on + strandat 3044.803 kb on - strand, within fliLat 3044.859 kb on + strand, within fliLat 3044.910 kb on + strand, within fliLat 3044.980 kb on - strand, within fliLat 3045.165 kb on + strandat 3045.173 kb on + strandat 3045.229 kb on + strandat 3045.230 kb on - strandat 3045.230 kb on - strandat 3045.230 kb on - strandat 3045.232 kb on - strandat 3045.253 kb on - strandat 3045.336 kb on + strand, within fliKat 3045.396 kb on + strand, within fliKat 3045.434 kb on - strand, within fliKat 3045.475 kb on - strand, within fliKat 3045.508 kb on + strand, within fliKat 3045.571 kb on - strand, within fliKat 3045.581 kb on - strand, within fliKat 3045.666 kb on + strand, within fliKat 3045.670 kb on + strand, within fliKat 3045.740 kb on - strand, within fliKat 3046.147 kb on - strand, within fliKat 3046.291 kb on + strandat 3046.584 kb on - strand, within fliJat 3046.618 kb on + strand, within fliJat 3046.771 kb on + strandat 3046.852 kb on + strandat 3046.915 kb on + strand, within fliI

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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3,044,375 - fliM BNILDI_15100 0.77 +0.5
3,044,599 - +0.3
3,044,637 + +2.3
3,044,803 - fliL BNILDI_15105 0.40 +0.4
3,044,859 + fliL BNILDI_15105 0.52 -0.6
3,044,910 + fliL BNILDI_15105 0.63 -0.2
3,044,980 - fliL BNILDI_15105 0.78 -0.0
3,045,165 + +2.7
3,045,173 + +0.0
3,045,229 + +0.5
3,045,230 - +2.1
3,045,230 - -0.0
3,045,230 - -0.0
3,045,232 - -0.6
3,045,253 - -0.2
3,045,336 + fliK BNILDI_15110 0.13 +0.3
3,045,396 + fliK BNILDI_15110 0.19 +1.6
3,045,434 - fliK BNILDI_15110 0.22 +0.6
3,045,475 - fliK BNILDI_15110 0.26 +0.8
3,045,508 + fliK BNILDI_15110 0.29 +0.8
3,045,571 - fliK BNILDI_15110 0.34 +0.9
3,045,581 - fliK BNILDI_15110 0.35 +0.2
3,045,666 + fliK BNILDI_15110 0.43 +2.3
3,045,670 + fliK BNILDI_15110 0.43 -0.1
3,045,740 - fliK BNILDI_15110 0.49 -0.7
3,046,147 - fliK BNILDI_15110 0.85 +1.7
3,046,291 + -1.6
3,046,584 - fliJ BNILDI_15115 0.62 +1.5
3,046,618 + fliJ BNILDI_15115 0.70 +1.3
3,046,771 + +2.0
3,046,852 + +1.6
3,046,915 + fliI BNILDI_15120 0.11 +0.9

Or see this region's nucleotide sequence