Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeeJ and BNILDI_14940 are separated by 233 nucleotides BNILDI_14940 and Asn_trna are separated by 122 nucleotides Asn_trna and mtfA are separated by 100 nucleotides mtfA and Ser_trna are separated by 93 nucleotides Ser_trna and yodB are separated by 569 nucleotides
BNILDI_14935: yeeJ - inverse autotransporter adhesin YeeJ, at 3,012,688 to 3,019,572
yeeJ
BNILDI_14940: BNILDI_14940 - hypothetical protein, at 3,019,806 to 3,019,955
_14940
BNILDI_14945: Asn_trna - tRNA-Asn(gtt), at 3,020,078 to 3,020,153
_trna
BNILDI_14950: mtfA - DgsA anti-repressor MtfA, at 3,020,254 to 3,021,051
mtfA
BNILDI_14955: Ser_trna - tRNA-Ser(cga), at 3,021,145 to 3,021,234
_trna
BNILDI_14960: yodB - Cytochrome b561-like protein, at 3,021,804 to 3,022,334
yodB
Position (kb)
3020
3021
3022 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3019.368 kb on + strand at 3019.393 kb on - strand at 3019.555 kb on - strand at 3019.620 kb on - strand at 3019.620 kb on - strand at 3019.664 kb on + strand at 3019.699 kb on + strand at 3019.700 kb on - strand at 3019.769 kb on + strand at 3019.792 kb on + strand at 3019.792 kb on + strand at 3019.924 kb on - strand, within BNILDI_14940 at 3020.001 kb on - strand at 3020.022 kb on - strand at 3020.176 kb on + strand at 3020.255 kb on + strand at 3020.397 kb on - strand, within mtfA at 3020.441 kb on + strand, within mtfA at 3020.442 kb on - strand, within mtfA at 3020.709 kb on + strand, within mtfA at 3020.709 kb on + strand, within mtfA at 3020.709 kb on + strand, within mtfA at 3020.815 kb on + strand, within mtfA at 3020.815 kb on + strand, within mtfA at 3020.968 kb on + strand, within mtfA at 3021.045 kb on + strand at 3021.046 kb on - strand at 3021.293 kb on + strand at 3021.692 kb on - strand at 3021.755 kb on + strand at 3021.756 kb on - strand at 3021.839 kb on + strand at 3021.853 kb on + strand at 3021.906 kb on - strand, within yodB at 3022.013 kb on - strand, within yodB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 3,019,368 + +1.8 3,019,393 - -1.2 3,019,555 - +0.3 3,019,620 - +0.2 3,019,620 - -0.0 3,019,664 + +2.8 3,019,699 + +0.0 3,019,700 - -0.9 3,019,769 + +0.0 3,019,792 + -0.4 3,019,792 + +0.3 3,019,924 - BNILDI_14940 0.79 +0.5 3,020,001 - -0.2 3,020,022 - -0.5 3,020,176 + +0.5 3,020,255 + -0.9 3,020,397 - mtfA BNILDI_14950 0.18 -0.9 3,020,441 + mtfA BNILDI_14950 0.23 +1.8 3,020,442 - mtfA BNILDI_14950 0.24 +0.0 3,020,709 + mtfA BNILDI_14950 0.57 -0.2 3,020,709 + mtfA BNILDI_14950 0.57 -0.7 3,020,709 + mtfA BNILDI_14950 0.57 -1.6 3,020,815 + mtfA BNILDI_14950 0.70 +1.8 3,020,815 + mtfA BNILDI_14950 0.70 -0.4 3,020,968 + mtfA BNILDI_14950 0.89 +0.4 3,021,045 + -1.0 3,021,046 - -1.2 3,021,293 + +1.2 3,021,692 - -0.6 3,021,755 + -0.2 3,021,756 - -0.5 3,021,839 + -1.3 3,021,853 + -0.4 3,021,906 - yodB BNILDI_14960 0.19 -0.5 3,022,013 - yodB BNILDI_14960 0.39 -0.6
Or see this region's nucleotide sequence