Strain Fitness in Escherichia coli ECRC62 around BNILDI_14950

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeeJ and BNILDI_14940 are separated by 233 nucleotidesBNILDI_14940 and Asn_trna are separated by 122 nucleotidesAsn_trna and mtfA are separated by 100 nucleotidesmtfA and Ser_trna are separated by 93 nucleotidesSer_trna and yodB are separated by 569 nucleotides BNILDI_14935: yeeJ - inverse autotransporter adhesin YeeJ, at 3,012,688 to 3,019,572 yeeJ BNILDI_14940: BNILDI_14940 - hypothetical protein, at 3,019,806 to 3,019,955 _14940 BNILDI_14945: Asn_trna - tRNA-Asn(gtt), at 3,020,078 to 3,020,153 _trna BNILDI_14950: mtfA - DgsA anti-repressor MtfA, at 3,020,254 to 3,021,051 mtfA BNILDI_14955: Ser_trna - tRNA-Ser(cga), at 3,021,145 to 3,021,234 _trna BNILDI_14960: yodB - Cytochrome b561-like protein, at 3,021,804 to 3,022,334 yodB Position (kb) 3020 3021 3022Strain fitness (log2 ratio) -1 0 1 2 3at 3019.368 kb on + strandat 3019.393 kb on - strandat 3019.555 kb on - strandat 3019.620 kb on - strandat 3019.620 kb on - strandat 3019.664 kb on + strandat 3019.699 kb on + strandat 3019.700 kb on - strandat 3019.769 kb on + strandat 3019.792 kb on + strandat 3019.792 kb on + strandat 3019.924 kb on - strand, within BNILDI_14940at 3020.001 kb on - strandat 3020.022 kb on - strandat 3020.176 kb on + strandat 3020.255 kb on + strandat 3020.397 kb on - strand, within mtfAat 3020.441 kb on + strand, within mtfAat 3020.442 kb on - strand, within mtfAat 3020.709 kb on + strand, within mtfAat 3020.709 kb on + strand, within mtfAat 3020.709 kb on + strand, within mtfAat 3020.815 kb on + strand, within mtfAat 3020.815 kb on + strand, within mtfAat 3020.968 kb on + strand, within mtfAat 3021.045 kb on + strandat 3021.046 kb on - strandat 3021.293 kb on + strandat 3021.692 kb on - strandat 3021.755 kb on + strandat 3021.756 kb on - strandat 3021.839 kb on + strandat 3021.853 kb on + strandat 3021.906 kb on - strand, within yodBat 3022.013 kb on - strand, within yodB

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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3,019,368 + +1.8
3,019,393 - -1.2
3,019,555 - +0.3
3,019,620 - +0.2
3,019,620 - -0.0
3,019,664 + +2.8
3,019,699 + +0.0
3,019,700 - -0.9
3,019,769 + +0.0
3,019,792 + -0.4
3,019,792 + +0.3
3,019,924 - BNILDI_14940 0.79 +0.5
3,020,001 - -0.2
3,020,022 - -0.5
3,020,176 + +0.5
3,020,255 + -0.9
3,020,397 - mtfA BNILDI_14950 0.18 -0.9
3,020,441 + mtfA BNILDI_14950 0.23 +1.8
3,020,442 - mtfA BNILDI_14950 0.24 +0.0
3,020,709 + mtfA BNILDI_14950 0.57 -0.2
3,020,709 + mtfA BNILDI_14950 0.57 -0.7
3,020,709 + mtfA BNILDI_14950 0.57 -1.6
3,020,815 + mtfA BNILDI_14950 0.70 +1.8
3,020,815 + mtfA BNILDI_14950 0.70 -0.4
3,020,968 + mtfA BNILDI_14950 0.89 +0.4
3,021,045 + -1.0
3,021,046 - -1.2
3,021,293 + +1.2
3,021,692 - -0.6
3,021,755 + -0.2
3,021,756 - -0.5
3,021,839 + -1.3
3,021,853 + -0.4
3,021,906 - yodB BNILDI_14960 0.19 -0.5
3,022,013 - yodB BNILDI_14960 0.39 -0.6

Or see this region's nucleotide sequence