Strain Fitness in Escherichia coli ECRC62 around BNILDI_13630

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaidA and ubiG are separated by 127 nucleotidesubiG and gyrA are separated by 146 nucleotides BNILDI_13625: aidA - Autotransporter adhesin AidA, at 2,732,566 to 2,736,060 aidA BNILDI_13630: ubiG - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 2,736,188 to 2,736,910 ubiG BNILDI_13635: gyrA - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 2,737,057 to 2,739,684 gyrA Position (kb) 2736 2737Strain fitness (log2 ratio) -1 0 1 2 3 4at 2735.273 kb on + strand, within aidAat 2735.299 kb on + strand, within aidAat 2735.300 kb on - strand, within aidAat 2735.340 kb on + strand, within aidAat 2735.566 kb on + strand, within aidAat 2735.566 kb on + strand, within aidAat 2735.710 kb on + strand, within aidAat 2735.843 kb on + strandat 2735.843 kb on + strandat 2735.844 kb on - strandat 2735.844 kb on - strandat 2735.855 kb on - strandat 2735.959 kb on - strandat 2735.959 kb on - strandat 2736.059 kb on - strandat 2736.193 kb on + strandat 2736.948 kb on - strandat 2736.949 kb on + strandat 2736.970 kb on - strandat 2736.978 kb on + strandat 2736.978 kb on + strandat 2736.979 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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2,735,273 + aidA BNILDI_13625 0.77 +0.4
2,735,299 + aidA BNILDI_13625 0.78 -0.1
2,735,300 - aidA BNILDI_13625 0.78 +0.6
2,735,340 + aidA BNILDI_13625 0.79 -0.3
2,735,566 + aidA BNILDI_13625 0.86 +0.4
2,735,566 + aidA BNILDI_13625 0.86 +2.4
2,735,710 + aidA BNILDI_13625 0.90 +0.6
2,735,843 + +0.3
2,735,843 + +0.6
2,735,844 - -0.4
2,735,844 - -0.4
2,735,855 - +3.8
2,735,959 - -0.2
2,735,959 - +1.4
2,736,059 - -1.2
2,736,193 + -0.2
2,736,948 - +1.5
2,736,949 + +1.1
2,736,970 - +1.0
2,736,978 + -0.2
2,736,978 + -1.0
2,736,979 - +0.8

Or see this region's nucleotide sequence