Strain Fitness in Escherichia coli ECRC62 around BNILDI_13520

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntarnT and arnD overlap by 1 nucleotidesarnD and arnA overlap by 4 nucleotides BNILDI_13515: arnT - lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase, at 2,708,081 to 2,709,733 arnT BNILDI_13520: arnD - 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase, at 2,709,733 to 2,710,623 arnD BNILDI_13525: arnA - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 2,710,620 to 2,712,602 arnA Position (kb) 2709 2710 2711Strain fitness (log2 ratio) -2 -1 0 1 2at 2708.745 kb on + strand, within arnTat 2708.746 kb on - strand, within arnTat 2708.788 kb on + strand, within arnTat 2708.790 kb on + strand, within arnTat 2708.790 kb on + strand, within arnTat 2708.790 kb on + strand, within arnTat 2708.896 kb on - strand, within arnTat 2708.896 kb on - strand, within arnTat 2708.955 kb on + strand, within arnTat 2708.956 kb on - strand, within arnTat 2708.974 kb on + strand, within arnTat 2708.974 kb on + strand, within arnTat 2708.974 kb on + strand, within arnTat 2709.008 kb on - strand, within arnTat 2709.115 kb on - strand, within arnTat 2709.119 kb on - strand, within arnTat 2709.167 kb on + strand, within arnTat 2709.342 kb on + strand, within arnTat 2709.342 kb on + strand, within arnTat 2709.343 kb on - strand, within arnTat 2709.343 kb on - strand, within arnTat 2709.365 kb on - strand, within arnTat 2709.378 kb on + strand, within arnTat 2709.379 kb on - strand, within arnTat 2709.379 kb on - strand, within arnTat 2709.384 kb on - strand, within arnTat 2709.409 kb on + strand, within arnTat 2709.497 kb on - strand, within arnTat 2709.509 kb on + strand, within arnTat 2709.509 kb on + strand, within arnTat 2709.510 kb on - strand, within arnTat 2709.529 kb on + strand, within arnTat 2709.530 kb on - strand, within arnTat 2709.561 kb on + strand, within arnTat 2709.561 kb on + strand, within arnTat 2709.681 kb on + strandat 2709.682 kb on - strandat 2709.684 kb on + strandat 2709.685 kb on - strandat 2709.826 kb on + strand, within arnDat 2709.933 kb on + strand, within arnDat 2709.934 kb on - strand, within arnDat 2709.936 kb on - strand, within arnDat 2710.034 kb on - strand, within arnDat 2710.119 kb on - strand, within arnDat 2710.375 kb on - strand, within arnDat 2710.531 kb on - strand, within arnDat 2710.534 kb on - strand, within arnDat 2710.534 kb on - strand, within arnDat 2710.540 kb on - strandat 2710.606 kb on + strandat 2710.607 kb on - strandat 2710.613 kb on - strandat 2710.631 kb on + strandat 2710.755 kb on + strandat 2710.756 kb on - strandat 2710.787 kb on + strandat 2711.275 kb on + strand, within arnAat 2711.276 kb on - strand, within arnAat 2711.280 kb on - strand, within arnAat 2711.286 kb on - strand, within arnAat 2711.348 kb on - strand, within arnAat 2711.388 kb on + strand, within arnAat 2711.409 kb on - strand, within arnAat 2711.470 kb on + strand, within arnAat 2711.582 kb on - strand, within arnAat 2711.582 kb on - strand, within arnAat 2711.582 kb on - strand, within arnA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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2,708,745 + arnT BNILDI_13515 0.40 -0.3
2,708,746 - arnT BNILDI_13515 0.40 +0.4
2,708,788 + arnT BNILDI_13515 0.43 +1.0
2,708,790 + arnT BNILDI_13515 0.43 -0.2
2,708,790 + arnT BNILDI_13515 0.43 +0.6
2,708,790 + arnT BNILDI_13515 0.43 +0.8
2,708,896 - arnT BNILDI_13515 0.49 -0.7
2,708,896 - arnT BNILDI_13515 0.49 +0.4
2,708,955 + arnT BNILDI_13515 0.53 -2.0
2,708,956 - arnT BNILDI_13515 0.53 -0.4
2,708,974 + arnT BNILDI_13515 0.54 -1.6
2,708,974 + arnT BNILDI_13515 0.54 +0.2
2,708,974 + arnT BNILDI_13515 0.54 -0.1
2,709,008 - arnT BNILDI_13515 0.56 +0.2
2,709,115 - arnT BNILDI_13515 0.63 -0.1
2,709,119 - arnT BNILDI_13515 0.63 -0.4
2,709,167 + arnT BNILDI_13515 0.66 +0.8
2,709,342 + arnT BNILDI_13515 0.76 +0.5
2,709,342 + arnT BNILDI_13515 0.76 -0.8
2,709,343 - arnT BNILDI_13515 0.76 +0.7
2,709,343 - arnT BNILDI_13515 0.76 +0.6
2,709,365 - arnT BNILDI_13515 0.78 -0.6
2,709,378 + arnT BNILDI_13515 0.78 -0.2
2,709,379 - arnT BNILDI_13515 0.79 +0.5
2,709,379 - arnT BNILDI_13515 0.79 +0.6
2,709,384 - arnT BNILDI_13515 0.79 -0.4
2,709,409 + arnT BNILDI_13515 0.80 -0.1
2,709,497 - arnT BNILDI_13515 0.86 -0.2
2,709,509 + arnT BNILDI_13515 0.86 -0.5
2,709,509 + arnT BNILDI_13515 0.86 -0.2
2,709,510 - arnT BNILDI_13515 0.86 -0.8
2,709,529 + arnT BNILDI_13515 0.88 +1.8
2,709,530 - arnT BNILDI_13515 0.88 -0.2
2,709,561 + arnT BNILDI_13515 0.90 +0.8
2,709,561 + arnT BNILDI_13515 0.90 +0.3
2,709,681 + +0.5
2,709,682 - -0.9
2,709,684 + +1.8
2,709,685 - +0.6
2,709,826 + arnD BNILDI_13520 0.10 -1.0
2,709,933 + arnD BNILDI_13520 0.22 -0.1
2,709,934 - arnD BNILDI_13520 0.23 +0.6
2,709,936 - arnD BNILDI_13520 0.23 +2.5
2,710,034 - arnD BNILDI_13520 0.34 -0.5
2,710,119 - arnD BNILDI_13520 0.43 +0.2
2,710,375 - arnD BNILDI_13520 0.72 -1.2
2,710,531 - arnD BNILDI_13520 0.90 +0.1
2,710,534 - arnD BNILDI_13520 0.90 -0.8
2,710,534 - arnD BNILDI_13520 0.90 +0.4
2,710,540 - +1.2
2,710,606 + +0.1
2,710,607 - +0.4
2,710,613 - -1.0
2,710,631 + -1.4
2,710,755 + +0.3
2,710,756 - -1.8
2,710,787 + -0.2
2,711,275 + arnA BNILDI_13525 0.33 -0.2
2,711,276 - arnA BNILDI_13525 0.33 -0.1
2,711,280 - arnA BNILDI_13525 0.33 -0.5
2,711,286 - arnA BNILDI_13525 0.34 +0.7
2,711,348 - arnA BNILDI_13525 0.37 -0.2
2,711,388 + arnA BNILDI_13525 0.39 -0.4
2,711,409 - arnA BNILDI_13525 0.40 -0.1
2,711,470 + arnA BNILDI_13525 0.43 -0.2
2,711,582 - arnA BNILDI_13525 0.49 +1.2
2,711,582 - arnA BNILDI_13525 0.49 -1.5
2,711,582 - arnA BNILDI_13525 0.49 -0.1

Or see this region's nucleotide sequence