Strain Fitness in Escherichia coli ECRC62 around BNILDI_12615

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_12605 and BNILDI_12610 are separated by 140 nucleotidesBNILDI_12610 and BNILDI_12615 are separated by 24 nucleotidesBNILDI_12615 and eutC overlap by 20 nucleotideseutC and eutL are separated by 9 nucleotides BNILDI_12605: BNILDI_12605 - Prophage integrase IntZ, at 2,529,878 to 2,530,939 _12605 BNILDI_12610: BNILDI_12610 - hypothetical protein, at 2,531,080 to 2,531,247 _12610 BNILDI_12615: BNILDI_12615 - Ethanolamine ammonia lyase large subunit, at 2,531,272 to 2,531,673 _12615 BNILDI_12620: eutC - ethanolamine ammonia-lyase subunit beta, at 2,531,654 to 2,532,541 eutC BNILDI_12625: eutL - ethanolamine utilization microcompartment protein EutL, at 2,532,551 to 2,533,210 eutL Position (kb) 2531 2532Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2530.368 kb on - strand, within BNILDI_12605at 2530.369 kb on + strand, within BNILDI_12605at 2530.369 kb on + strand, within BNILDI_12605at 2530.370 kb on - strand, within BNILDI_12605at 2530.380 kb on - strand, within BNILDI_12605at 2530.380 kb on - strand, within BNILDI_12605at 2530.425 kb on + strand, within BNILDI_12605at 2530.425 kb on + strand, within BNILDI_12605at 2530.426 kb on - strand, within BNILDI_12605at 2530.571 kb on + strand, within BNILDI_12605at 2530.572 kb on - strand, within BNILDI_12605at 2530.597 kb on + strand, within BNILDI_12605at 2530.700 kb on - strand, within BNILDI_12605at 2530.832 kb on - strand, within BNILDI_12605at 2530.960 kb on - strandat 2530.960 kb on - strandat 2531.022 kb on + strandat 2531.022 kb on + strandat 2531.303 kb on + strandat 2531.303 kb on + strandat 2531.304 kb on - strandat 2531.304 kb on - strandat 2531.304 kb on - strandat 2531.321 kb on + strand, within BNILDI_12615at 2531.322 kb on - strand, within BNILDI_12615at 2531.567 kb on - strand, within BNILDI_12615at 2531.683 kb on - strandat 2531.683 kb on - strandat 2531.851 kb on - strand, within eutCat 2531.853 kb on + strand, within eutCat 2532.022 kb on - strand, within eutCat 2532.136 kb on - strand, within eutCat 2532.136 kb on - strand, within eutCat 2532.374 kb on + strand, within eutCat 2532.375 kb on - strand, within eutCat 2532.394 kb on + strand, within eutCat 2532.427 kb on + strand, within eutCat 2532.428 kb on - strand, within eutCat 2532.428 kb on - strand, within eutCat 2532.428 kb on - strand, within eutCat 2532.428 kb on - strand, within eutCat 2532.428 kb on - strand, within eutCat 2532.500 kb on - strandat 2532.500 kb on - strandat 2532.500 kb on - strandat 2532.500 kb on - strandat 2532.562 kb on - strandat 2532.634 kb on - strand, within eutL

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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2,530,368 - BNILDI_12605 0.46 +0.8
2,530,369 + BNILDI_12605 0.46 +0.2
2,530,369 + BNILDI_12605 0.46 +0.3
2,530,370 - BNILDI_12605 0.46 +0.1
2,530,380 - BNILDI_12605 0.47 -2.6
2,530,380 - BNILDI_12605 0.47 +0.0
2,530,425 + BNILDI_12605 0.52 -0.7
2,530,425 + BNILDI_12605 0.52 +0.2
2,530,426 - BNILDI_12605 0.52 -0.3
2,530,571 + BNILDI_12605 0.65 -0.2
2,530,572 - BNILDI_12605 0.65 +2.8
2,530,597 + BNILDI_12605 0.68 +0.8
2,530,700 - BNILDI_12605 0.77 +0.9
2,530,832 - BNILDI_12605 0.90 +0.0
2,530,960 - -0.1
2,530,960 - -1.7
2,531,022 + +0.7
2,531,022 + +0.2
2,531,303 + +1.2
2,531,303 + +0.4
2,531,304 - +0.3
2,531,304 - +1.7
2,531,304 - -1.3
2,531,321 + BNILDI_12615 0.12 +1.3
2,531,322 - BNILDI_12615 0.12 -0.3
2,531,567 - BNILDI_12615 0.73 +1.4
2,531,683 - -0.2
2,531,683 - +3.8
2,531,851 - eutC BNILDI_12620 0.22 -1.0
2,531,853 + eutC BNILDI_12620 0.22 +1.1
2,532,022 - eutC BNILDI_12620 0.41 -0.7
2,532,136 - eutC BNILDI_12620 0.54 +1.8
2,532,136 - eutC BNILDI_12620 0.54 +0.3
2,532,374 + eutC BNILDI_12620 0.81 +0.3
2,532,375 - eutC BNILDI_12620 0.81 -0.2
2,532,394 + eutC BNILDI_12620 0.83 +0.8
2,532,427 + eutC BNILDI_12620 0.87 -0.1
2,532,428 - eutC BNILDI_12620 0.87 -0.3
2,532,428 - eutC BNILDI_12620 0.87 -0.2
2,532,428 - eutC BNILDI_12620 0.87 -0.0
2,532,428 - eutC BNILDI_12620 0.87 -0.4
2,532,428 - eutC BNILDI_12620 0.87 +0.5
2,532,500 - -0.5
2,532,500 - +0.1
2,532,500 - -0.1
2,532,500 - -1.0
2,532,562 - +0.1
2,532,634 - eutL BNILDI_12625 0.13 +0.8

Or see this region's nucleotide sequence