Strain Fitness in Escherichia coli ECRC62 around BNILDI_11385

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntxerD and BNILDI_11385 overlap by 8 nucleotidesBNILDI_11385 and BNILDI_11390 overlap by 4 nucleotides BNILDI_11380: xerD - integrase, at 2,291,910 to 2,293,112 xerD BNILDI_11385: BNILDI_11385 - integrase, at 2,293,105 to 2,294,409 _11385 BNILDI_11390: BNILDI_11390 - DNA-binding protein, at 2,294,406 to 2,296,280 _11390 Position (kb) 2293 2294 2295Strain fitness (log2 ratio) -1 0 1at 2294.098 kb on - strand, within BNILDI_11385at 2294.886 kb on + strand, within BNILDI_11390at 2295.259 kb on + strand, within BNILDI_11390

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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2,294,098 - BNILDI_11385 0.76 +0.6
2,294,886 + BNILDI_11390 0.26 -0.1
2,295,259 + BNILDI_11390 0.45 -0.4

Or see this region's nucleotide sequence