Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ascF and ascG are separated by 256 nucleotides ascG and hydN are separated by 148 nucleotides hydN and hypF are separated by 152 nucleotides
BNILDI_11025: ascF - PTS cellobiose/arbutin/salicin transporter subunit IIBC, at 2,226,411 to 2,227,868
ascF
BNILDI_11030: ascG - DNA-binding transcriptional regulator AscG, at 2,228,125 to 2,229,138
ascG
BNILDI_11035: hydN - electron transport protein HydN, at 2,229,287 to 2,229,814
hydN
BNILDI_11040: hypF - carbamoyltransferase HypF, at 2,229,967 to 2,232,219
hypF
Position (kb)
2228
2229
2230 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2227.146 kb on - strand, within ascF at 2227.169 kb on + strand, within ascF at 2227.170 kb on - strand, within ascF at 2227.171 kb on + strand, within ascF at 2227.171 kb on + strand, within ascF at 2227.171 kb on + strand, within ascF at 2227.172 kb on - strand, within ascF at 2227.172 kb on - strand, within ascF at 2227.172 kb on - strand, within ascF at 2227.172 kb on - strand, within ascF at 2227.172 kb on - strand, within ascF at 2227.213 kb on + strand, within ascF at 2227.213 kb on + strand, within ascF at 2227.214 kb on - strand, within ascF at 2227.217 kb on + strand, within ascF at 2227.218 kb on - strand, within ascF at 2227.219 kb on + strand, within ascF at 2227.305 kb on + strand, within ascF at 2227.306 kb on - strand, within ascF at 2227.340 kb on + strand, within ascF at 2227.340 kb on + strand, within ascF at 2227.589 kb on + strand, within ascF at 2227.613 kb on + strand, within ascF at 2227.613 kb on + strand, within ascF at 2227.694 kb on + strand, within ascF at 2227.694 kb on + strand, within ascF at 2227.695 kb on - strand, within ascF at 2227.784 kb on + strand at 2227.784 kb on + strand at 2227.784 kb on + strand at 2227.784 kb on + strand at 2227.784 kb on + strand at 2227.784 kb on + strand at 2227.785 kb on - strand at 2227.809 kb on - strand at 2227.901 kb on + strand at 2227.901 kb on + strand at 2228.092 kb on + strand at 2228.092 kb on + strand at 2228.092 kb on + strand at 2228.093 kb on - strand at 2228.093 kb on - strand at 2228.093 kb on - strand at 2228.112 kb on + strand at 2228.350 kb on + strand, within ascG at 2228.363 kb on + strand, within ascG at 2228.461 kb on + strand, within ascG at 2228.462 kb on - strand, within ascG at 2228.491 kb on - strand, within ascG at 2228.568 kb on + strand, within ascG at 2228.652 kb on - strand, within ascG at 2228.754 kb on + strand, within ascG at 2228.755 kb on - strand, within ascG at 2228.877 kb on + strand, within ascG at 2229.252 kb on + strand at 2229.317 kb on - strand at 2229.317 kb on - strand at 2229.322 kb on + strand at 2229.509 kb on - strand, within hydN at 2229.610 kb on - strand, within hydN at 2229.715 kb on + strand, within hydN at 2229.823 kb on + strand at 2229.864 kb on + strand at 2229.907 kb on + strand at 2229.960 kb on + strand at 2230.064 kb on + strand at 2230.065 kb on - strand at 2230.065 kb on - strand at 2230.087 kb on - strand at 2230.103 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 2,227,146 - ascF BNILDI_11025 0.50 +1.1 2,227,169 + ascF BNILDI_11025 0.52 -0.2 2,227,170 - ascF BNILDI_11025 0.52 +0.0 2,227,171 + ascF BNILDI_11025 0.52 -0.2 2,227,171 + ascF BNILDI_11025 0.52 -0.6 2,227,171 + ascF BNILDI_11025 0.52 -1.7 2,227,172 - ascF BNILDI_11025 0.52 +0.2 2,227,172 - ascF BNILDI_11025 0.52 -0.7 2,227,172 - ascF BNILDI_11025 0.52 +0.8 2,227,172 - ascF BNILDI_11025 0.52 +0.2 2,227,172 - ascF BNILDI_11025 0.52 +1.7 2,227,213 + ascF BNILDI_11025 0.55 -1.0 2,227,213 + ascF BNILDI_11025 0.55 -0.2 2,227,214 - ascF BNILDI_11025 0.55 -0.2 2,227,217 + ascF BNILDI_11025 0.55 +0.8 2,227,218 - ascF BNILDI_11025 0.55 -0.1 2,227,219 + ascF BNILDI_11025 0.55 +0.2 2,227,305 + ascF BNILDI_11025 0.61 +1.8 2,227,306 - ascF BNILDI_11025 0.61 -0.4 2,227,340 + ascF BNILDI_11025 0.64 +1.6 2,227,340 + ascF BNILDI_11025 0.64 +0.2 2,227,589 + ascF BNILDI_11025 0.81 -0.0 2,227,613 + ascF BNILDI_11025 0.82 -1.0 2,227,613 + ascF BNILDI_11025 0.82 +2.2 2,227,694 + ascF BNILDI_11025 0.88 -1.0 2,227,694 + ascF BNILDI_11025 0.88 -0.8 2,227,695 - ascF BNILDI_11025 0.88 -0.2 2,227,784 + -0.5 2,227,784 + -1.2 2,227,784 + -2.6 2,227,784 + -1.0 2,227,784 + +0.6 2,227,784 + +1.8 2,227,785 - -0.6 2,227,809 - -1.0 2,227,901 + -1.3 2,227,901 + +0.8 2,228,092 + -0.9 2,228,092 + -0.2 2,228,092 + +0.2 2,228,093 - +0.5 2,228,093 - +0.2 2,228,093 - +0.3 2,228,112 + -1.9 2,228,350 + ascG BNILDI_11030 0.22 +0.5 2,228,363 + ascG BNILDI_11030 0.23 -1.3 2,228,461 + ascG BNILDI_11030 0.33 +2.9 2,228,462 - ascG BNILDI_11030 0.33 +0.6 2,228,491 - ascG BNILDI_11030 0.36 -0.5 2,228,568 + ascG BNILDI_11030 0.44 -0.2 2,228,652 - ascG BNILDI_11030 0.52 -0.5 2,228,754 + ascG BNILDI_11030 0.62 +1.0 2,228,755 - ascG BNILDI_11030 0.62 +0.0 2,228,877 + ascG BNILDI_11030 0.74 +0.0 2,229,252 + -1.2 2,229,317 - -1.4 2,229,317 - +2.6 2,229,322 + +0.4 2,229,509 - hydN BNILDI_11035 0.42 -0.2 2,229,610 - hydN BNILDI_11035 0.61 +0.0 2,229,715 + hydN BNILDI_11035 0.81 +0.5 2,229,823 + +0.0 2,229,864 + -0.3 2,229,907 + +0.6 2,229,960 + +0.1 2,230,064 + +0.0 2,230,065 - +1.2 2,230,065 - +1.3 2,230,087 - +0.2 2,230,103 + -0.0
Or see this region's nucleotide sequence