Strain Fitness in Escherichia coli ECRC62 around BNILDI_10545

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfucP and fucA are separated by 546 nucleotidesfucA and fucO are separated by 27 nucleotides BNILDI_10540: fucP - L-fucose:H+ symporter permease, at 2,126,043 to 2,127,359 fucP BNILDI_10545: fucA - L-fuculose-phosphate aldolase, at 2,127,906 to 2,128,553 fucA BNILDI_10550: fucO - lactaldehyde reductase, at 2,128,581 to 2,129,729 fucO Position (kb) 2127 2128 2129Strain fitness (log2 ratio) -1 0 1 2at 2127.315 kb on - strandat 2127.385 kb on - strandat 2127.547 kb on - strandat 2127.904 kb on + strandat 2127.918 kb on - strandat 2128.001 kb on - strand, within fucAat 2128.068 kb on - strand, within fucAat 2128.243 kb on - strand, within fucAat 2128.243 kb on - strand, within fucAat 2128.266 kb on - strand, within fucAat 2128.266 kb on - strand, within fucAat 2128.271 kb on + strand, within fucAat 2128.799 kb on + strand, within fucOat 2128.800 kb on - strand, within fucOat 2128.800 kb on - strand, within fucOat 2128.826 kb on - strand, within fucOat 2128.884 kb on - strand, within fucOat 2128.889 kb on + strand, within fucOat 2128.975 kb on + strand, within fucOat 2129.130 kb on - strand, within fucOat 2129.190 kb on + strand, within fucOat 2129.190 kb on + strand, within fucOat 2129.192 kb on + strand, within fucOat 2129.192 kb on + strand, within fucOat 2129.192 kb on + strand, within fucOat 2129.285 kb on + strand, within fucOat 2129.286 kb on - strand, within fucOat 2129.320 kb on - strand, within fucOat 2129.449 kb on - strand, within fucOat 2129.475 kb on + strand, within fucOat 2129.516 kb on + strand, within fucOat 2129.516 kb on + strand, within fucO

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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2,127,315 - +0.3
2,127,385 - -1.3
2,127,547 - -1.0
2,127,904 + -1.5
2,127,918 - -0.6
2,128,001 - fucA BNILDI_10545 0.15 -0.2
2,128,068 - fucA BNILDI_10545 0.25 +1.1
2,128,243 - fucA BNILDI_10545 0.52 -0.2
2,128,243 - fucA BNILDI_10545 0.52 +0.3
2,128,266 - fucA BNILDI_10545 0.56 +1.8
2,128,266 - fucA BNILDI_10545 0.56 +1.5
2,128,271 + fucA BNILDI_10545 0.56 -1.5
2,128,799 + fucO BNILDI_10550 0.19 +0.4
2,128,800 - fucO BNILDI_10550 0.19 -0.3
2,128,800 - fucO BNILDI_10550 0.19 -0.7
2,128,826 - fucO BNILDI_10550 0.21 -0.3
2,128,884 - fucO BNILDI_10550 0.26 +1.8
2,128,889 + fucO BNILDI_10550 0.27 -0.2
2,128,975 + fucO BNILDI_10550 0.34 +0.3
2,129,130 - fucO BNILDI_10550 0.48 +0.2
2,129,190 + fucO BNILDI_10550 0.53 -0.0
2,129,190 + fucO BNILDI_10550 0.53 -0.1
2,129,192 + fucO BNILDI_10550 0.53 +0.3
2,129,192 + fucO BNILDI_10550 0.53 -0.9
2,129,192 + fucO BNILDI_10550 0.53 +0.5
2,129,285 + fucO BNILDI_10550 0.61 -0.3
2,129,286 - fucO BNILDI_10550 0.61 +0.3
2,129,320 - fucO BNILDI_10550 0.64 -0.2
2,129,449 - fucO BNILDI_10550 0.76 +1.8
2,129,475 + fucO BNILDI_10550 0.78 +0.1
2,129,516 + fucO BNILDI_10550 0.81 -0.4
2,129,516 + fucO BNILDI_10550 0.81 +2.0

Or see this region's nucleotide sequence