Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fucP and fucA are separated by 546 nucleotides fucA and fucO are separated by 27 nucleotides
BNILDI_10540: fucP - L-fucose:H+ symporter permease, at 2,126,043 to 2,127,359
fucP
BNILDI_10545: fucA - L-fuculose-phosphate aldolase, at 2,127,906 to 2,128,553
fucA
BNILDI_10550: fucO - lactaldehyde reductase, at 2,128,581 to 2,129,729
fucO
Position (kb)
2127
2128
2129 Strain fitness (log2 ratio)
-1
0
1
2 at 2127.315 kb on - strand at 2127.385 kb on - strand at 2127.547 kb on - strand at 2127.904 kb on + strand at 2127.918 kb on - strand at 2128.001 kb on - strand, within fucA at 2128.068 kb on - strand, within fucA at 2128.243 kb on - strand, within fucA at 2128.243 kb on - strand, within fucA at 2128.266 kb on - strand, within fucA at 2128.266 kb on - strand, within fucA at 2128.271 kb on + strand, within fucA at 2128.799 kb on + strand, within fucO at 2128.800 kb on - strand, within fucO at 2128.800 kb on - strand, within fucO at 2128.826 kb on - strand, within fucO at 2128.884 kb on - strand, within fucO at 2128.889 kb on + strand, within fucO at 2128.975 kb on + strand, within fucO at 2129.130 kb on - strand, within fucO at 2129.190 kb on + strand, within fucO at 2129.190 kb on + strand, within fucO at 2129.192 kb on + strand, within fucO at 2129.192 kb on + strand, within fucO at 2129.192 kb on + strand, within fucO at 2129.285 kb on + strand, within fucO at 2129.286 kb on - strand, within fucO at 2129.320 kb on - strand, within fucO at 2129.449 kb on - strand, within fucO at 2129.475 kb on + strand, within fucO at 2129.516 kb on + strand, within fucO at 2129.516 kb on + strand, within fucO
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 2,127,315 - +0.3 2,127,385 - -1.3 2,127,547 - -1.0 2,127,904 + -1.5 2,127,918 - -0.6 2,128,001 - fucA BNILDI_10545 0.15 -0.2 2,128,068 - fucA BNILDI_10545 0.25 +1.1 2,128,243 - fucA BNILDI_10545 0.52 -0.2 2,128,243 - fucA BNILDI_10545 0.52 +0.3 2,128,266 - fucA BNILDI_10545 0.56 +1.8 2,128,266 - fucA BNILDI_10545 0.56 +1.5 2,128,271 + fucA BNILDI_10545 0.56 -1.5 2,128,799 + fucO BNILDI_10550 0.19 +0.4 2,128,800 - fucO BNILDI_10550 0.19 -0.3 2,128,800 - fucO BNILDI_10550 0.19 -0.7 2,128,826 - fucO BNILDI_10550 0.21 -0.3 2,128,884 - fucO BNILDI_10550 0.26 +1.8 2,128,889 + fucO BNILDI_10550 0.27 -0.2 2,128,975 + fucO BNILDI_10550 0.34 +0.3 2,129,130 - fucO BNILDI_10550 0.48 +0.2 2,129,190 + fucO BNILDI_10550 0.53 -0.0 2,129,190 + fucO BNILDI_10550 0.53 -0.1 2,129,192 + fucO BNILDI_10550 0.53 +0.3 2,129,192 + fucO BNILDI_10550 0.53 -0.9 2,129,192 + fucO BNILDI_10550 0.53 +0.5 2,129,285 + fucO BNILDI_10550 0.61 -0.3 2,129,286 - fucO BNILDI_10550 0.61 +0.3 2,129,320 - fucO BNILDI_10550 0.64 -0.2 2,129,449 - fucO BNILDI_10550 0.76 +1.8 2,129,475 + fucO BNILDI_10550 0.78 +0.1 2,129,516 + fucO BNILDI_10550 0.81 -0.4 2,129,516 + fucO BNILDI_10550 0.81 +2.0
Or see this region's nucleotide sequence