Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yggP and glpX overlap by 4 nucleotides glpX and fumE are separated by 21 nucleotides fumE and coaA overlap by 4 nucleotides coaA and cysA overlap by 29 nucleotides
BNILDI_09790: yggP - Uncharacterized protein YggP, at 1,971,032 to 1,972,309
yggP
BNILDI_09795: glpX - class II fructose-bisphosphatase, at 1,972,306 to 1,973,271
glpX
BNILDI_09800: fumE - fumarase E, at 1,973,293 to 1,973,802
fumE
BNILDI_09805: coaA - nucleoside/nucleotide kinase family protein, at 1,973,799 to 1,974,512
coaA
BNILDI_09810: cysA - ABC transporter ATP-binding protein, at 1,974,484 to 1,975,161
cysA
Position (kb) 1973
1974 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1972.633 kb on - strand, within glpX at 1972.657 kb on + strand, within glpX at 1972.735 kb on - strand, within glpX at 1972.756 kb on - strand, within glpX at 1972.900 kb on - strand, within glpX at 1972.918 kb on + strand, within glpX at 1972.918 kb on + strand, within glpX at 1972.918 kb on + strand, within glpX at 1972.918 kb on + strand, within glpX at 1972.919 kb on - strand, within glpX at 1972.919 kb on - strand, within glpX at 1972.919 kb on - strand, within glpX at 1972.919 kb on - strand, within glpX at 1972.919 kb on - strand, within glpX at 1972.919 kb on - strand, within glpX at 1972.984 kb on - strand, within glpX at 1973.016 kb on + strand, within glpX at 1973.027 kb on - strand, within glpX at 1973.219 kb on + strand at 1973.250 kb on + strand at 1973.250 kb on + strand at 1973.251 kb on - strand at 1973.251 kb on - strand at 1973.251 kb on - strand at 1973.252 kb on + strand at 1973.253 kb on - strand at 1973.253 kb on - strand at 1973.253 kb on - strand at 1973.253 kb on - strand at 1973.376 kb on + strand, within fumE at 1973.536 kb on - strand, within fumE at 1973.545 kb on + strand, within fumE at 1973.784 kb on - strand at 1973.873 kb on + strand, within coaA at 1973.911 kb on + strand, within coaA at 1973.927 kb on + strand, within coaA at 1973.927 kb on + strand, within coaA at 1973.969 kb on + strand, within coaA at 1973.970 kb on - strand, within coaA at 1973.975 kb on - strand, within coaA at 1973.975 kb on - strand, within coaA at 1973.979 kb on - strand, within coaA at 1973.992 kb on - strand, within coaA at 1973.992 kb on - strand, within coaA at 1974.058 kb on - strand, within coaA at 1974.063 kb on - strand, within coaA at 1974.167 kb on + strand, within coaA at 1974.168 kb on - strand, within coaA at 1974.168 kb on - strand, within coaA at 1974.405 kb on + strand, within coaA at 1974.568 kb on - strand, within cysA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 1,972,633 - glpX BNILDI_09795 0.34 +0.4 1,972,657 + glpX BNILDI_09795 0.36 -0.8 1,972,735 - glpX BNILDI_09795 0.44 -0.8 1,972,756 - glpX BNILDI_09795 0.47 -0.6 1,972,900 - glpX BNILDI_09795 0.61 -0.2 1,972,918 + glpX BNILDI_09795 0.63 -0.5 1,972,918 + glpX BNILDI_09795 0.63 +2.0 1,972,918 + glpX BNILDI_09795 0.63 -2.2 1,972,918 + glpX BNILDI_09795 0.63 -1.3 1,972,919 - glpX BNILDI_09795 0.63 -0.1 1,972,919 - glpX BNILDI_09795 0.63 -0.1 1,972,919 - glpX BNILDI_09795 0.63 +1.6 1,972,919 - glpX BNILDI_09795 0.63 -0.1 1,972,919 - glpX BNILDI_09795 0.63 -0.3 1,972,919 - glpX BNILDI_09795 0.63 -0.4 1,972,984 - glpX BNILDI_09795 0.70 -0.7 1,973,016 + glpX BNILDI_09795 0.73 +0.6 1,973,027 - glpX BNILDI_09795 0.75 -0.5 1,973,219 + +0.3 1,973,250 + -0.5 1,973,250 + +0.1 1,973,251 - -1.1 1,973,251 - +0.2 1,973,251 - +0.9 1,973,252 + -0.6 1,973,253 - -0.7 1,973,253 - +1.9 1,973,253 - +0.8 1,973,253 - -0.4 1,973,376 + fumE BNILDI_09800 0.16 -0.4 1,973,536 - fumE BNILDI_09800 0.48 -1.5 1,973,545 + fumE BNILDI_09800 0.49 -1.3 1,973,784 - +0.4 1,973,873 + coaA BNILDI_09805 0.10 +1.2 1,973,911 + coaA BNILDI_09805 0.16 -1.8 1,973,927 + coaA BNILDI_09805 0.18 -0.4 1,973,927 + coaA BNILDI_09805 0.18 -0.4 1,973,969 + coaA BNILDI_09805 0.24 -0.0 1,973,970 - coaA BNILDI_09805 0.24 +0.5 1,973,975 - coaA BNILDI_09805 0.25 -0.8 1,973,975 - coaA BNILDI_09805 0.25 -0.5 1,973,979 - coaA BNILDI_09805 0.25 -0.5 1,973,992 - coaA BNILDI_09805 0.27 +0.4 1,973,992 - coaA BNILDI_09805 0.27 -0.8 1,974,058 - coaA BNILDI_09805 0.36 -0.5 1,974,063 - coaA BNILDI_09805 0.37 -0.1 1,974,167 + coaA BNILDI_09805 0.52 +0.0 1,974,168 - coaA BNILDI_09805 0.52 -0.7 1,974,168 - coaA BNILDI_09805 0.52 +0.5 1,974,405 + coaA BNILDI_09805 0.85 +0.3 1,974,568 - cysA BNILDI_09810 0.12 -2.9
Or see this region's nucleotide sequence