Strain Fitness in Escherichia coli ECRC62 around BNILDI_09505

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_09500 and BNILDI_09505 are separated by 419 nucleotidesBNILDI_09505 and BNILDI_09510 are separated by 37 nucleotides BNILDI_09500: BNILDI_09500 - adhesin, at 1,896,126 to 1,896,863 _09500 BNILDI_09505: BNILDI_09505 - hypothetical protein, at 1,897,283 to 1,897,753 _09505 BNILDI_09510: BNILDI_09510 - IS5-like element ISKpn26 family transposase, at 1,897,791 to 1,898,771 _09510 Position (kb) 1897 1898Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1896.293 kb on + strand, within BNILDI_09500at 1896.297 kb on + strand, within BNILDI_09500at 1896.297 kb on + strand, within BNILDI_09500at 1896.298 kb on - strand, within BNILDI_09500at 1896.369 kb on + strand, within BNILDI_09500at 1896.369 kb on + strand, within BNILDI_09500at 1896.369 kb on + strand, within BNILDI_09500at 1896.370 kb on - strand, within BNILDI_09500at 1896.370 kb on - strand, within BNILDI_09500at 1896.560 kb on - strand, within BNILDI_09500at 1896.607 kb on + strand, within BNILDI_09500at 1896.608 kb on - strand, within BNILDI_09500at 1896.608 kb on - strand, within BNILDI_09500at 1896.608 kb on - strand, within BNILDI_09500at 1896.837 kb on - strandat 1896.956 kb on - strandat 1897.097 kb on + strandat 1897.238 kb on - strandat 1897.241 kb on + strandat 1897.282 kb on + strandat 1897.350 kb on - strand, within BNILDI_09505at 1897.538 kb on - strand, within BNILDI_09505at 1897.816 kb on - strandat 1897.854 kb on + strandat 1897.894 kb on + strand, within BNILDI_09510at 1897.894 kb on + strand, within BNILDI_09510at 1898.029 kb on - strand, within BNILDI_09510at 1898.029 kb on - strand, within BNILDI_09510at 1898.638 kb on + strand, within BNILDI_09510

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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1,896,293 + BNILDI_09500 0.23 +0.6
1,896,297 + BNILDI_09500 0.23 -0.8
1,896,297 + BNILDI_09500 0.23 -0.4
1,896,298 - BNILDI_09500 0.23 +0.1
1,896,369 + BNILDI_09500 0.33 -2.7
1,896,369 + BNILDI_09500 0.33 +2.9
1,896,369 + BNILDI_09500 0.33 +0.9
1,896,370 - BNILDI_09500 0.33 -0.2
1,896,370 - BNILDI_09500 0.33 -0.4
1,896,560 - BNILDI_09500 0.59 +0.4
1,896,607 + BNILDI_09500 0.65 +0.1
1,896,608 - BNILDI_09500 0.65 +1.9
1,896,608 - BNILDI_09500 0.65 -0.2
1,896,608 - BNILDI_09500 0.65 -0.6
1,896,837 - -0.5
1,896,956 - -0.2
1,897,097 + +3.2
1,897,238 - +0.8
1,897,241 + -2.3
1,897,282 + +0.2
1,897,350 - BNILDI_09505 0.14 +0.8
1,897,538 - BNILDI_09505 0.54 +0.9
1,897,816 - +0.1
1,897,854 + +0.9
1,897,894 + BNILDI_09510 0.10 -1.6
1,897,894 + BNILDI_09510 0.10 +0.0
1,898,029 - BNILDI_09510 0.24 +1.2
1,898,029 - BNILDI_09510 0.24 -0.2
1,898,638 + BNILDI_09510 0.86 -0.6

Or see this region's nucleotide sequence