Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_09500 and BNILDI_09505 are separated by 419 nucleotides BNILDI_09505 and BNILDI_09510 are separated by 37 nucleotides
BNILDI_09500: BNILDI_09500 - adhesin, at 1,896,126 to 1,896,863
_09500
BNILDI_09505: BNILDI_09505 - hypothetical protein, at 1,897,283 to 1,897,753
_09505
BNILDI_09510: BNILDI_09510 - IS5-like element ISKpn26 family transposase, at 1,897,791 to 1,898,771
_09510
Position (kb)
1897
1898 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1896.293 kb on + strand, within BNILDI_09500 at 1896.297 kb on + strand, within BNILDI_09500 at 1896.297 kb on + strand, within BNILDI_09500 at 1896.298 kb on - strand, within BNILDI_09500 at 1896.369 kb on + strand, within BNILDI_09500 at 1896.369 kb on + strand, within BNILDI_09500 at 1896.369 kb on + strand, within BNILDI_09500 at 1896.370 kb on - strand, within BNILDI_09500 at 1896.370 kb on - strand, within BNILDI_09500 at 1896.560 kb on - strand, within BNILDI_09500 at 1896.607 kb on + strand, within BNILDI_09500 at 1896.608 kb on - strand, within BNILDI_09500 at 1896.608 kb on - strand, within BNILDI_09500 at 1896.608 kb on - strand, within BNILDI_09500 at 1896.837 kb on - strand at 1896.956 kb on - strand at 1897.097 kb on + strand at 1897.238 kb on - strand at 1897.241 kb on + strand at 1897.282 kb on + strand at 1897.350 kb on - strand, within BNILDI_09505 at 1897.538 kb on - strand, within BNILDI_09505 at 1897.816 kb on - strand at 1897.854 kb on + strand at 1897.894 kb on + strand, within BNILDI_09510 at 1897.894 kb on + strand, within BNILDI_09510 at 1898.029 kb on - strand, within BNILDI_09510 at 1898.029 kb on - strand, within BNILDI_09510 at 1898.638 kb on + strand, within BNILDI_09510
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 1,896,293 + BNILDI_09500 0.23 +0.6 1,896,297 + BNILDI_09500 0.23 -0.8 1,896,297 + BNILDI_09500 0.23 -0.4 1,896,298 - BNILDI_09500 0.23 +0.1 1,896,369 + BNILDI_09500 0.33 -2.7 1,896,369 + BNILDI_09500 0.33 +2.9 1,896,369 + BNILDI_09500 0.33 +0.9 1,896,370 - BNILDI_09500 0.33 -0.2 1,896,370 - BNILDI_09500 0.33 -0.4 1,896,560 - BNILDI_09500 0.59 +0.4 1,896,607 + BNILDI_09500 0.65 +0.1 1,896,608 - BNILDI_09500 0.65 +1.9 1,896,608 - BNILDI_09500 0.65 -0.2 1,896,608 - BNILDI_09500 0.65 -0.6 1,896,837 - -0.5 1,896,956 - -0.2 1,897,097 + +3.2 1,897,238 - +0.8 1,897,241 + -2.3 1,897,282 + +0.2 1,897,350 - BNILDI_09505 0.14 +0.8 1,897,538 - BNILDI_09505 0.54 +0.9 1,897,816 - +0.1 1,897,854 + +0.9 1,897,894 + BNILDI_09510 0.10 -1.6 1,897,894 + BNILDI_09510 0.10 +0.0 1,898,029 - BNILDI_09510 0.24 +1.2 1,898,029 - BNILDI_09510 0.24 -0.2 1,898,638 + BNILDI_09510 0.86 -0.6
Or see this region's nucleotide sequence