Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt idlP and iraD overlap by 4 nucleotides iraD and hypT overlap by 8 nucleotides hypT and iadA are separated by 64 nucleotides
BNILDI_07725: idlP - iraD leader peptide, at 1,545,744 to 1,545,827
idlP
BNILDI_07730: iraD - anti-adapter protein IraD, at 1,545,824 to 1,546,216
iraD
BNILDI_07735: hypT - hypochlorite stress DNA-binding transcriptional regulator HypT, at 1,546,209 to 1,547,120
hypT
BNILDI_07740: iadA - beta-aspartyl-peptidase, at 1,547,185 to 1,548,357
iadA
Position (kb) 1546
1547
1548 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1545.211 kb on + strand at 1545.225 kb on + strand at 1545.301 kb on - strand at 1545.650 kb on - strand at 1545.723 kb on - strand at 1545.723 kb on - strand at 1545.763 kb on - strand, within idlP at 1545.795 kb on + strand, within idlP at 1545.795 kb on + strand, within idlP at 1545.795 kb on + strand, within idlP at 1545.796 kb on - strand, within idlP at 1545.796 kb on - strand, within idlP at 1545.952 kb on - strand, within iraD at 1546.078 kb on + strand, within iraD at 1546.094 kb on + strand, within iraD at 1546.095 kb on - strand, within iraD at 1546.125 kb on + strand, within iraD at 1546.126 kb on - strand, within iraD at 1546.214 kb on + strand at 1546.294 kb on + strand at 1546.373 kb on - strand, within hypT at 1546.373 kb on - strand, within hypT at 1546.507 kb on + strand, within hypT at 1546.508 kb on - strand, within hypT at 1547.128 kb on + strand at 1547.129 kb on - strand at 1547.158 kb on - strand at 1547.252 kb on + strand at 1547.252 kb on + strand at 1547.252 kb on + strand at 1547.253 kb on - strand at 1547.253 kb on - strand at 1547.253 kb on - strand at 1547.255 kb on - strand at 1547.559 kb on + strand, within iadA at 1547.654 kb on - strand, within iadA at 1547.720 kb on + strand, within iadA at 1547.720 kb on + strand, within iadA at 1547.721 kb on - strand, within iadA at 1547.724 kb on + strand, within iadA at 1547.731 kb on + strand, within iadA at 1547.743 kb on - strand, within iadA at 1547.743 kb on - strand, within iadA at 1547.817 kb on + strand, within iadA at 1547.948 kb on + strand, within iadA at 1547.949 kb on - strand, within iadA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 1,545,211 + +0.1 1,545,225 + -0.0 1,545,301 - +0.5 1,545,650 - +1.1 1,545,723 - -0.5 1,545,723 - +1.4 1,545,763 - idlP BNILDI_07725 0.23 -0.7 1,545,795 + idlP BNILDI_07725 0.61 -0.1 1,545,795 + idlP BNILDI_07725 0.61 -0.4 1,545,795 + idlP BNILDI_07725 0.61 +0.9 1,545,796 - idlP BNILDI_07725 0.62 -1.8 1,545,796 - idlP BNILDI_07725 0.62 -0.9 1,545,952 - iraD BNILDI_07730 0.33 -0.2 1,546,078 + iraD BNILDI_07730 0.65 +0.5 1,546,094 + iraD BNILDI_07730 0.69 +1.0 1,546,095 - iraD BNILDI_07730 0.69 +1.5 1,546,125 + iraD BNILDI_07730 0.77 +0.6 1,546,126 - iraD BNILDI_07730 0.77 -0.1 1,546,214 + +0.7 1,546,294 + -1.6 1,546,373 - hypT BNILDI_07735 0.18 -0.3 1,546,373 - hypT BNILDI_07735 0.18 +1.2 1,546,507 + hypT BNILDI_07735 0.33 +0.3 1,546,508 - hypT BNILDI_07735 0.33 +0.9 1,547,128 + +0.9 1,547,129 - +0.0 1,547,158 - -0.1 1,547,252 + -0.3 1,547,252 + -0.4 1,547,252 + +2.2 1,547,253 - +0.2 1,547,253 - +0.2 1,547,253 - +0.7 1,547,255 - -0.0 1,547,559 + iadA BNILDI_07740 0.32 -1.8 1,547,654 - iadA BNILDI_07740 0.40 +1.9 1,547,720 + iadA BNILDI_07740 0.46 -0.4 1,547,720 + iadA BNILDI_07740 0.46 +0.2 1,547,721 - iadA BNILDI_07740 0.46 -0.5 1,547,724 + iadA BNILDI_07740 0.46 -0.7 1,547,731 + iadA BNILDI_07740 0.47 -0.5 1,547,743 - iadA BNILDI_07740 0.48 +0.4 1,547,743 - iadA BNILDI_07740 0.48 +0.4 1,547,817 + iadA BNILDI_07740 0.54 -0.2 1,547,948 + iadA BNILDI_07740 0.65 +0.1 1,547,949 - iadA BNILDI_07740 0.65 +0.5
Or see this region's nucleotide sequence