Strain Fitness in Escherichia coli ECRC62 around BNILDI_07730

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjiC and idlP are separated by 591 nucleotidesidlP and iraD overlap by 4 nucleotidesiraD and hypT overlap by 8 nucleotideshypT and iadA are separated by 64 nucleotides BNILDI_07720: yjiC - Uncharacterized protein YjiC, at 1,544,322 to 1,545,152 yjiC BNILDI_07725: idlP - iraD leader peptide, at 1,545,744 to 1,545,827 idlP BNILDI_07730: iraD - anti-adapter protein IraD, at 1,545,824 to 1,546,216 iraD BNILDI_07735: hypT - hypochlorite stress DNA-binding transcriptional regulator HypT, at 1,546,209 to 1,547,120 hypT BNILDI_07740: iadA - beta-aspartyl-peptidase, at 1,547,185 to 1,548,357 iadA Position (kb) 1545 1546 1547Strain fitness (log2 ratio) -2 -1 0 1at 1545.056 kb on - strand, within yjiCat 1545.156 kb on - strandat 1545.156 kb on - strandat 1545.211 kb on + strandat 1545.225 kb on + strandat 1545.301 kb on - strandat 1545.650 kb on - strandat 1545.723 kb on - strandat 1545.723 kb on - strandat 1545.763 kb on - strand, within idlPat 1545.795 kb on + strand, within idlPat 1545.795 kb on + strand, within idlPat 1545.795 kb on + strand, within idlPat 1545.796 kb on - strand, within idlPat 1545.796 kb on - strand, within idlPat 1545.952 kb on - strand, within iraDat 1546.078 kb on + strand, within iraDat 1546.094 kb on + strand, within iraDat 1546.095 kb on - strand, within iraDat 1546.125 kb on + strand, within iraDat 1546.126 kb on - strand, within iraDat 1546.214 kb on + strandat 1546.294 kb on + strandat 1546.373 kb on - strand, within hypTat 1546.373 kb on - strand, within hypTat 1546.507 kb on + strand, within hypTat 1546.508 kb on - strand, within hypTat 1547.128 kb on + strandat 1547.129 kb on - strandat 1547.158 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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1,545,056 - yjiC BNILDI_07720 0.88 +0.4
1,545,156 - +0.6
1,545,156 - -0.4
1,545,211 + +0.1
1,545,225 + -0.0
1,545,301 - +0.5
1,545,650 - +1.1
1,545,723 - -0.5
1,545,723 - +1.4
1,545,763 - idlP BNILDI_07725 0.23 -0.7
1,545,795 + idlP BNILDI_07725 0.61 -0.1
1,545,795 + idlP BNILDI_07725 0.61 -0.4
1,545,795 + idlP BNILDI_07725 0.61 +0.9
1,545,796 - idlP BNILDI_07725 0.62 -1.8
1,545,796 - idlP BNILDI_07725 0.62 -0.9
1,545,952 - iraD BNILDI_07730 0.33 -0.2
1,546,078 + iraD BNILDI_07730 0.65 +0.5
1,546,094 + iraD BNILDI_07730 0.69 +1.0
1,546,095 - iraD BNILDI_07730 0.69 +1.5
1,546,125 + iraD BNILDI_07730 0.77 +0.6
1,546,126 - iraD BNILDI_07730 0.77 -0.1
1,546,214 + +0.7
1,546,294 + -1.6
1,546,373 - hypT BNILDI_07735 0.18 -0.3
1,546,373 - hypT BNILDI_07735 0.18 +1.2
1,546,507 + hypT BNILDI_07735 0.33 +0.3
1,546,508 - hypT BNILDI_07735 0.33 +0.9
1,547,128 + +0.9
1,547,129 - +0.0
1,547,158 - -0.1

Or see this region's nucleotide sequence