Strain Fitness in Escherichia coli ECRC62 around BNILDI_07660

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfimB and fimE are separated by 477 nucleotidesfimE and fimA are separated by 478 nucleotides BNILDI_07655: fimB - type 1 fimbria switch DNA invertase FimB, at 1,529,861 to 1,530,463 fimB BNILDI_07660: fimE - type 1 fimbria switch DNA invertase FimE, at 1,530,941 to 1,531,537 fimE BNILDI_07665: fimA - Type-1 fimbrial protein, A chain precursor, at 1,532,016 to 1,532,564 fimA Position (kb) 1530 1531 1532Strain fitness (log2 ratio) -1 0 1 2at 1530.144 kb on + strand, within fimBat 1530.148 kb on + strand, within fimBat 1530.181 kb on - strand, within fimBat 1530.194 kb on - strand, within fimBat 1530.250 kb on + strand, within fimBat 1530.350 kb on + strand, within fimBat 1530.350 kb on + strand, within fimBat 1530.351 kb on - strand, within fimBat 1530.898 kb on + strandat 1530.903 kb on - strandat 1530.914 kb on + strandat 1531.026 kb on - strand, within fimEat 1531.067 kb on - strand, within fimEat 1531.105 kb on + strand, within fimEat 1531.106 kb on - strand, within fimEat 1531.165 kb on - strand, within fimEat 1531.245 kb on + strand, within fimEat 1531.249 kb on + strand, within fimEat 1531.290 kb on - strand, within fimEat 1531.348 kb on + strand, within fimEat 1531.349 kb on - strand, within fimEat 1531.349 kb on - strand, within fimEat 1531.349 kb on - strand, within fimEat 1531.446 kb on + strand, within fimEat 1531.446 kb on + strand, within fimEat 1531.610 kb on + strandat 1531.721 kb on + strandat 1531.987 kb on + strandat 1532.120 kb on + strand, within fimAat 1532.185 kb on + strand, within fimAat 1532.493 kb on + strand, within fimAat 1532.497 kb on - strand, within fimAat 1532.528 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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1,530,144 + fimB BNILDI_07655 0.47 +0.1
1,530,148 + fimB BNILDI_07655 0.48 +1.3
1,530,181 - fimB BNILDI_07655 0.53 -1.1
1,530,194 - fimB BNILDI_07655 0.55 +1.6
1,530,250 + fimB BNILDI_07655 0.65 -0.6
1,530,350 + fimB BNILDI_07655 0.81 -1.2
1,530,350 + fimB BNILDI_07655 0.81 -0.4
1,530,351 - fimB BNILDI_07655 0.81 +0.3
1,530,898 + -0.5
1,530,903 - +0.5
1,530,914 + -0.5
1,531,026 - fimE BNILDI_07660 0.14 +1.1
1,531,067 - fimE BNILDI_07660 0.21 +0.1
1,531,105 + fimE BNILDI_07660 0.27 +1.9
1,531,106 - fimE BNILDI_07660 0.28 +0.0
1,531,165 - fimE BNILDI_07660 0.38 -0.7
1,531,245 + fimE BNILDI_07660 0.51 +1.0
1,531,249 + fimE BNILDI_07660 0.52 +2.6
1,531,290 - fimE BNILDI_07660 0.58 +2.3
1,531,348 + fimE BNILDI_07660 0.68 -1.5
1,531,349 - fimE BNILDI_07660 0.68 +1.9
1,531,349 - fimE BNILDI_07660 0.68 +0.4
1,531,349 - fimE BNILDI_07660 0.68 +0.9
1,531,446 + fimE BNILDI_07660 0.85 +1.9
1,531,446 + fimE BNILDI_07660 0.85 -1.0
1,531,610 + -0.4
1,531,721 + +0.1
1,531,987 + -0.7
1,532,120 + fimA BNILDI_07665 0.19 -1.0
1,532,185 + fimA BNILDI_07665 0.31 -0.5
1,532,493 + fimA BNILDI_07665 0.87 -0.1
1,532,497 - fimA BNILDI_07665 0.88 -1.0
1,532,528 + +1.5

Or see this region's nucleotide sequence