Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimB and fimE are separated by 477 nucleotides fimE and fimA are separated by 478 nucleotides
BNILDI_07655: fimB - type 1 fimbria switch DNA invertase FimB, at 1,529,861 to 1,530,463
fimB
BNILDI_07660: fimE - type 1 fimbria switch DNA invertase FimE, at 1,530,941 to 1,531,537
fimE
BNILDI_07665: fimA - Type-1 fimbrial protein, A chain precursor, at 1,532,016 to 1,532,564
fimA
Position (kb)
1530
1531
1532 Strain fitness (log2 ratio)
-1
0
1
2 at 1530.144 kb on + strand, within fimB at 1530.148 kb on + strand, within fimB at 1530.181 kb on - strand, within fimB at 1530.194 kb on - strand, within fimB at 1530.250 kb on + strand, within fimB at 1530.350 kb on + strand, within fimB at 1530.350 kb on + strand, within fimB at 1530.351 kb on - strand, within fimB at 1530.898 kb on + strand at 1530.903 kb on - strand at 1530.914 kb on + strand at 1531.026 kb on - strand, within fimE at 1531.067 kb on - strand, within fimE at 1531.105 kb on + strand, within fimE at 1531.106 kb on - strand, within fimE at 1531.165 kb on - strand, within fimE at 1531.245 kb on + strand, within fimE at 1531.249 kb on + strand, within fimE at 1531.290 kb on - strand, within fimE at 1531.348 kb on + strand, within fimE at 1531.349 kb on - strand, within fimE at 1531.349 kb on - strand, within fimE at 1531.349 kb on - strand, within fimE at 1531.446 kb on + strand, within fimE at 1531.446 kb on + strand, within fimE at 1531.610 kb on + strand at 1531.721 kb on + strand at 1531.987 kb on + strand at 1532.120 kb on + strand, within fimA at 1532.185 kb on + strand, within fimA at 1532.493 kb on + strand, within fimA at 1532.497 kb on - strand, within fimA at 1532.528 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 1,530,144 + fimB BNILDI_07655 0.47 +0.1 1,530,148 + fimB BNILDI_07655 0.48 +1.3 1,530,181 - fimB BNILDI_07655 0.53 -1.1 1,530,194 - fimB BNILDI_07655 0.55 +1.6 1,530,250 + fimB BNILDI_07655 0.65 -0.6 1,530,350 + fimB BNILDI_07655 0.81 -1.2 1,530,350 + fimB BNILDI_07655 0.81 -0.4 1,530,351 - fimB BNILDI_07655 0.81 +0.3 1,530,898 + -0.5 1,530,903 - +0.5 1,530,914 + -0.5 1,531,026 - fimE BNILDI_07660 0.14 +1.1 1,531,067 - fimE BNILDI_07660 0.21 +0.1 1,531,105 + fimE BNILDI_07660 0.27 +1.9 1,531,106 - fimE BNILDI_07660 0.28 +0.0 1,531,165 - fimE BNILDI_07660 0.38 -0.7 1,531,245 + fimE BNILDI_07660 0.51 +1.0 1,531,249 + fimE BNILDI_07660 0.52 +2.6 1,531,290 - fimE BNILDI_07660 0.58 +2.3 1,531,348 + fimE BNILDI_07660 0.68 -1.5 1,531,349 - fimE BNILDI_07660 0.68 +1.9 1,531,349 - fimE BNILDI_07660 0.68 +0.4 1,531,349 - fimE BNILDI_07660 0.68 +0.9 1,531,446 + fimE BNILDI_07660 0.85 +1.9 1,531,446 + fimE BNILDI_07660 0.85 -1.0 1,531,610 + -0.4 1,531,721 + +0.1 1,531,987 + -0.7 1,532,120 + fimA BNILDI_07665 0.19 -1.0 1,532,185 + fimA BNILDI_07665 0.31 -0.5 1,532,493 + fimA BNILDI_07665 0.87 -0.1 1,532,497 - fimA BNILDI_07665 0.88 -1.0 1,532,528 + +1.5
Or see this region's nucleotide sequence