Strain Fitness in Escherichia coli ECRC62 around BNILDI_07620

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_07615 and BNILDI_07620 are separated by 358 nucleotidesBNILDI_07620 and BNILDI_07625 overlap by 4 nucleotides BNILDI_07615: BNILDI_07615 - restriction endonuclease subunit M, at 1,519,822 to 1,520,655 _07615 BNILDI_07620: BNILDI_07620 - ATP-binding protein, at 1,521,014 to 1,523,068 _07620 BNILDI_07625: BNILDI_07625 - restriction endonuclease, at 1,523,065 to 1,524,375 _07625 Position (kb) 1521 1522 1523 1524Strain fitness (log2 ratio) -2 -1 0 1 2at 1520.273 kb on + strand, within BNILDI_07615at 1520.273 kb on + strand, within BNILDI_07615at 1520.274 kb on - strand, within BNILDI_07615at 1520.296 kb on + strand, within BNILDI_07615at 1520.297 kb on - strand, within BNILDI_07615at 1520.317 kb on + strand, within BNILDI_07615at 1520.602 kb on - strandat 1520.602 kb on - strandat 1520.662 kb on + strandat 1520.663 kb on - strandat 1520.711 kb on + strandat 1520.736 kb on - strandat 1520.736 kb on - strandat 1520.804 kb on - strandat 1520.821 kb on - strandat 1520.863 kb on + strandat 1520.970 kb on - strandat 1521.001 kb on - strandat 1521.001 kb on - strandat 1521.001 kb on - strandat 1521.077 kb on + strandat 1521.102 kb on - strandat 1521.169 kb on - strandat 1521.173 kb on + strandat 1521.273 kb on + strand, within BNILDI_07620at 1521.331 kb on + strand, within BNILDI_07620at 1521.345 kb on + strand, within BNILDI_07620at 1521.352 kb on + strand, within BNILDI_07620at 1521.357 kb on + strand, within BNILDI_07620at 1521.358 kb on - strand, within BNILDI_07620at 1521.358 kb on - strand, within BNILDI_07620at 1521.358 kb on - strand, within BNILDI_07620at 1521.358 kb on - strand, within BNILDI_07620at 1521.361 kb on + strand, within BNILDI_07620at 1521.362 kb on - strand, within BNILDI_07620at 1521.362 kb on - strand, within BNILDI_07620at 1521.373 kb on + strand, within BNILDI_07620at 1521.393 kb on + strand, within BNILDI_07620at 1521.396 kb on - strand, within BNILDI_07620at 1521.474 kb on + strand, within BNILDI_07620at 1521.574 kb on + strand, within BNILDI_07620at 1521.631 kb on - strand, within BNILDI_07620at 1521.651 kb on + strand, within BNILDI_07620at 1521.681 kb on + strand, within BNILDI_07620at 1521.681 kb on + strand, within BNILDI_07620at 1521.681 kb on + strand, within BNILDI_07620at 1521.681 kb on + strand, within BNILDI_07620at 1521.733 kb on + strand, within BNILDI_07620at 1521.749 kb on - strand, within BNILDI_07620at 1521.842 kb on + strand, within BNILDI_07620at 1521.854 kb on - strand, within BNILDI_07620at 1521.954 kb on + strand, within BNILDI_07620at 1521.991 kb on - strand, within BNILDI_07620at 1522.130 kb on - strand, within BNILDI_07620at 1522.262 kb on + strand, within BNILDI_07620at 1522.490 kb on - strand, within BNILDI_07620at 1522.547 kb on - strand, within BNILDI_07620at 1522.688 kb on + strand, within BNILDI_07620at 1522.702 kb on + strand, within BNILDI_07620at 1522.703 kb on - strand, within BNILDI_07620at 1522.911 kb on - strandat 1523.273 kb on - strand, within BNILDI_07625at 1523.706 kb on - strand, within BNILDI_07625at 1523.718 kb on - strand, within BNILDI_07625at 1523.769 kb on + strand, within BNILDI_07625at 1523.812 kb on + strand, within BNILDI_07625at 1523.813 kb on - strand, within BNILDI_07625at 1523.826 kb on - strand, within BNILDI_07625at 1523.868 kb on + strand, within BNILDI_07625at 1523.960 kb on - strand, within BNILDI_07625

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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1,520,273 + BNILDI_07615 0.54 +1.2
1,520,273 + BNILDI_07615 0.54 -1.2
1,520,274 - BNILDI_07615 0.54 -0.8
1,520,296 + BNILDI_07615 0.57 -1.3
1,520,297 - BNILDI_07615 0.57 -1.0
1,520,317 + BNILDI_07615 0.59 -0.2
1,520,602 - +0.3
1,520,602 - +0.6
1,520,662 + +0.1
1,520,663 - -0.1
1,520,711 + -2.1
1,520,736 - +0.2
1,520,736 - +0.1
1,520,804 - -0.3
1,520,821 - +2.3
1,520,863 + -0.3
1,520,970 - +0.2
1,521,001 - +0.2
1,521,001 - -2.4
1,521,001 - -0.0
1,521,077 + -0.6
1,521,102 - -0.1
1,521,169 - -0.4
1,521,173 + +0.5
1,521,273 + BNILDI_07620 0.13 +0.4
1,521,331 + BNILDI_07620 0.15 +0.5
1,521,345 + BNILDI_07620 0.16 -0.7
1,521,352 + BNILDI_07620 0.16 -0.3
1,521,357 + BNILDI_07620 0.17 -0.5
1,521,358 - BNILDI_07620 0.17 -0.1
1,521,358 - BNILDI_07620 0.17 -1.5
1,521,358 - BNILDI_07620 0.17 -0.6
1,521,358 - BNILDI_07620 0.17 +1.6
1,521,361 + BNILDI_07620 0.17 +0.4
1,521,362 - BNILDI_07620 0.17 +2.3
1,521,362 - BNILDI_07620 0.17 -1.6
1,521,373 + BNILDI_07620 0.17 +0.5
1,521,393 + BNILDI_07620 0.18 +0.7
1,521,396 - BNILDI_07620 0.19 +2.5
1,521,474 + BNILDI_07620 0.22 +0.5
1,521,574 + BNILDI_07620 0.27 -0.6
1,521,631 - BNILDI_07620 0.30 +0.6
1,521,651 + BNILDI_07620 0.31 -0.2
1,521,681 + BNILDI_07620 0.32 +1.9
1,521,681 + BNILDI_07620 0.32 +0.3
1,521,681 + BNILDI_07620 0.32 +0.5
1,521,681 + BNILDI_07620 0.32 -0.4
1,521,733 + BNILDI_07620 0.35 +0.1
1,521,749 - BNILDI_07620 0.36 -1.8
1,521,842 + BNILDI_07620 0.40 -0.3
1,521,854 - BNILDI_07620 0.41 +1.9
1,521,954 + BNILDI_07620 0.46 +0.9
1,521,991 - BNILDI_07620 0.48 +0.4
1,522,130 - BNILDI_07620 0.54 -0.4
1,522,262 + BNILDI_07620 0.61 +1.9
1,522,490 - BNILDI_07620 0.72 +1.4
1,522,547 - BNILDI_07620 0.75 -0.1
1,522,688 + BNILDI_07620 0.81 +1.5
1,522,702 + BNILDI_07620 0.82 -0.3
1,522,703 - BNILDI_07620 0.82 +0.2
1,522,911 - +0.0
1,523,273 - BNILDI_07625 0.16 -0.9
1,523,706 - BNILDI_07625 0.49 -2.0
1,523,718 - BNILDI_07625 0.50 -0.2
1,523,769 + BNILDI_07625 0.54 -0.9
1,523,812 + BNILDI_07625 0.57 -0.7
1,523,813 - BNILDI_07625 0.57 +0.9
1,523,826 - BNILDI_07625 0.58 -0.4
1,523,868 + BNILDI_07625 0.61 -0.7
1,523,960 - BNILDI_07625 0.68 +0.2

Or see this region's nucleotide sequence