Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_07615 and BNILDI_07620 are separated by 358 nucleotides BNILDI_07620 and BNILDI_07625 overlap by 4 nucleotides
BNILDI_07615: BNILDI_07615 - restriction endonuclease subunit M, at 1,519,822 to 1,520,655
_07615
BNILDI_07620: BNILDI_07620 - ATP-binding protein, at 1,521,014 to 1,523,068
_07620
BNILDI_07625: BNILDI_07625 - restriction endonuclease, at 1,523,065 to 1,524,375
_07625
Position (kb)
1521
1522
1523
1524 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1520.273 kb on + strand, within BNILDI_07615 at 1520.273 kb on + strand, within BNILDI_07615 at 1520.274 kb on - strand, within BNILDI_07615 at 1520.296 kb on + strand, within BNILDI_07615 at 1520.297 kb on - strand, within BNILDI_07615 at 1520.317 kb on + strand, within BNILDI_07615 at 1520.602 kb on - strand at 1520.602 kb on - strand at 1520.662 kb on + strand at 1520.663 kb on - strand at 1520.711 kb on + strand at 1520.736 kb on - strand at 1520.736 kb on - strand at 1520.804 kb on - strand at 1520.821 kb on - strand at 1520.863 kb on + strand at 1520.970 kb on - strand at 1521.001 kb on - strand at 1521.001 kb on - strand at 1521.001 kb on - strand at 1521.077 kb on + strand at 1521.102 kb on - strand at 1521.169 kb on - strand at 1521.173 kb on + strand at 1521.273 kb on + strand, within BNILDI_07620 at 1521.331 kb on + strand, within BNILDI_07620 at 1521.345 kb on + strand, within BNILDI_07620 at 1521.352 kb on + strand, within BNILDI_07620 at 1521.357 kb on + strand, within BNILDI_07620 at 1521.358 kb on - strand, within BNILDI_07620 at 1521.358 kb on - strand, within BNILDI_07620 at 1521.358 kb on - strand, within BNILDI_07620 at 1521.358 kb on - strand, within BNILDI_07620 at 1521.361 kb on + strand, within BNILDI_07620 at 1521.362 kb on - strand, within BNILDI_07620 at 1521.362 kb on - strand, within BNILDI_07620 at 1521.373 kb on + strand, within BNILDI_07620 at 1521.393 kb on + strand, within BNILDI_07620 at 1521.396 kb on - strand, within BNILDI_07620 at 1521.474 kb on + strand, within BNILDI_07620 at 1521.574 kb on + strand, within BNILDI_07620 at 1521.631 kb on - strand, within BNILDI_07620 at 1521.651 kb on + strand, within BNILDI_07620 at 1521.681 kb on + strand, within BNILDI_07620 at 1521.681 kb on + strand, within BNILDI_07620 at 1521.681 kb on + strand, within BNILDI_07620 at 1521.681 kb on + strand, within BNILDI_07620 at 1521.733 kb on + strand, within BNILDI_07620 at 1521.749 kb on - strand, within BNILDI_07620 at 1521.842 kb on + strand, within BNILDI_07620 at 1521.854 kb on - strand, within BNILDI_07620 at 1521.954 kb on + strand, within BNILDI_07620 at 1521.991 kb on - strand, within BNILDI_07620 at 1522.130 kb on - strand, within BNILDI_07620 at 1522.262 kb on + strand, within BNILDI_07620 at 1522.490 kb on - strand, within BNILDI_07620 at 1522.547 kb on - strand, within BNILDI_07620 at 1522.688 kb on + strand, within BNILDI_07620 at 1522.702 kb on + strand, within BNILDI_07620 at 1522.703 kb on - strand, within BNILDI_07620 at 1522.911 kb on - strand at 1523.273 kb on - strand, within BNILDI_07625 at 1523.706 kb on - strand, within BNILDI_07625 at 1523.718 kb on - strand, within BNILDI_07625 at 1523.769 kb on + strand, within BNILDI_07625 at 1523.812 kb on + strand, within BNILDI_07625 at 1523.813 kb on - strand, within BNILDI_07625 at 1523.826 kb on - strand, within BNILDI_07625 at 1523.868 kb on + strand, within BNILDI_07625 at 1523.960 kb on - strand, within BNILDI_07625
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 1,520,273 + BNILDI_07615 0.54 +1.2 1,520,273 + BNILDI_07615 0.54 -1.2 1,520,274 - BNILDI_07615 0.54 -0.8 1,520,296 + BNILDI_07615 0.57 -1.3 1,520,297 - BNILDI_07615 0.57 -1.0 1,520,317 + BNILDI_07615 0.59 -0.2 1,520,602 - +0.3 1,520,602 - +0.6 1,520,662 + +0.1 1,520,663 - -0.1 1,520,711 + -2.1 1,520,736 - +0.2 1,520,736 - +0.1 1,520,804 - -0.3 1,520,821 - +2.3 1,520,863 + -0.3 1,520,970 - +0.2 1,521,001 - +0.2 1,521,001 - -2.4 1,521,001 - -0.0 1,521,077 + -0.6 1,521,102 - -0.1 1,521,169 - -0.4 1,521,173 + +0.5 1,521,273 + BNILDI_07620 0.13 +0.4 1,521,331 + BNILDI_07620 0.15 +0.5 1,521,345 + BNILDI_07620 0.16 -0.7 1,521,352 + BNILDI_07620 0.16 -0.3 1,521,357 + BNILDI_07620 0.17 -0.5 1,521,358 - BNILDI_07620 0.17 -0.1 1,521,358 - BNILDI_07620 0.17 -1.5 1,521,358 - BNILDI_07620 0.17 -0.6 1,521,358 - BNILDI_07620 0.17 +1.6 1,521,361 + BNILDI_07620 0.17 +0.4 1,521,362 - BNILDI_07620 0.17 +2.3 1,521,362 - BNILDI_07620 0.17 -1.6 1,521,373 + BNILDI_07620 0.17 +0.5 1,521,393 + BNILDI_07620 0.18 +0.7 1,521,396 - BNILDI_07620 0.19 +2.5 1,521,474 + BNILDI_07620 0.22 +0.5 1,521,574 + BNILDI_07620 0.27 -0.6 1,521,631 - BNILDI_07620 0.30 +0.6 1,521,651 + BNILDI_07620 0.31 -0.2 1,521,681 + BNILDI_07620 0.32 +1.9 1,521,681 + BNILDI_07620 0.32 +0.3 1,521,681 + BNILDI_07620 0.32 +0.5 1,521,681 + BNILDI_07620 0.32 -0.4 1,521,733 + BNILDI_07620 0.35 +0.1 1,521,749 - BNILDI_07620 0.36 -1.8 1,521,842 + BNILDI_07620 0.40 -0.3 1,521,854 - BNILDI_07620 0.41 +1.9 1,521,954 + BNILDI_07620 0.46 +0.9 1,521,991 - BNILDI_07620 0.48 +0.4 1,522,130 - BNILDI_07620 0.54 -0.4 1,522,262 + BNILDI_07620 0.61 +1.9 1,522,490 - BNILDI_07620 0.72 +1.4 1,522,547 - BNILDI_07620 0.75 -0.1 1,522,688 + BNILDI_07620 0.81 +1.5 1,522,702 + BNILDI_07620 0.82 -0.3 1,522,703 - BNILDI_07620 0.82 +0.2 1,522,911 - +0.0 1,523,273 - BNILDI_07625 0.16 -0.9 1,523,706 - BNILDI_07625 0.49 -2.0 1,523,718 - BNILDI_07625 0.50 -0.2 1,523,769 + BNILDI_07625 0.54 -0.9 1,523,812 + BNILDI_07625 0.57 -0.7 1,523,813 - BNILDI_07625 0.57 +0.9 1,523,826 - BNILDI_07625 0.58 -0.4 1,523,868 + BNILDI_07625 0.61 -0.7 1,523,960 - BNILDI_07625 0.68 +0.2
Or see this region's nucleotide sequence