Strain Fitness in Escherichia coli ECRC62 around BNILDI_07565

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfucP and BNILDI_07560 are separated by 27 nucleotidesBNILDI_07560 and BNILDI_07565 are separated by 135 nucleotidesBNILDI_07565 and insB are separated by 128 nucleotidesinsB and BNILDI_07575 are separated by 527 nucleotides BNILDI_07555: fucP - L-fucose:H+ symporter permease, at 1,505,984 to 1,507,300 fucP BNILDI_07560: BNILDI_07560 - PfkB family carbohydrate kinase, at 1,507,328 to 1,508,080 _07560 BNILDI_07565: BNILDI_07565 - HTH-Tnp-IS1 domain-containing protein, at 1,508,216 to 1,508,275 _07565 BNILDI_07570: insB - Transposase and inactivated derivatives, IS1 family, at 1,508,404 to 1,508,697 insB BNILDI_07575: BNILDI_07575 - hypothetical protein, at 1,509,225 to 1,509,335 _07575 Position (kb) 1508 1509Strain fitness (log2 ratio) -2 -1 0 1 2at 1507.653 kb on + strand, within BNILDI_07560at 1507.925 kb on + strand, within BNILDI_07560at 1507.926 kb on - strand, within BNILDI_07560at 1507.931 kb on + strand, within BNILDI_07560at 1507.933 kb on + strand, within BNILDI_07560at 1507.934 kb on - strand, within BNILDI_07560at 1508.621 kb on + strand, within insBat 1508.681 kb on + strandat 1508.759 kb on + strandat 1508.759 kb on + strandat 1508.760 kb on - strandat 1508.762 kb on - strandat 1508.762 kb on - strandat 1508.763 kb on + strandat 1508.764 kb on - strandat 1508.764 kb on - strandat 1508.773 kb on + strandat 1508.962 kb on - strandat 1508.987 kb on - strandat 1508.987 kb on - strandat 1509.026 kb on + strandat 1509.026 kb on + strandat 1509.027 kb on - strandat 1509.031 kb on - strandat 1509.064 kb on - strandat 1509.155 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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1,507,653 + BNILDI_07560 0.43 +0.3
1,507,925 + BNILDI_07560 0.79 +0.7
1,507,926 - BNILDI_07560 0.79 +0.8
1,507,931 + BNILDI_07560 0.80 +0.8
1,507,933 + BNILDI_07560 0.80 +0.7
1,507,934 - BNILDI_07560 0.80 +1.9
1,508,621 + insB BNILDI_07570 0.74 -0.3
1,508,681 + +1.2
1,508,759 + -0.6
1,508,759 + -2.4
1,508,760 - -0.4
1,508,762 - +0.8
1,508,762 - -0.5
1,508,763 + -0.4
1,508,764 - -0.3
1,508,764 - -0.6
1,508,773 + -1.3
1,508,962 - +0.8
1,508,987 - -0.8
1,508,987 - -0.4
1,509,026 + -0.6
1,509,026 + -0.3
1,509,027 - -0.3
1,509,031 - +0.7
1,509,064 - +1.6
1,509,155 + +0.7

Or see this region's nucleotide sequence