Strain Fitness in Escherichia coli ECRC62 around BNILDI_07560

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfucP and BNILDI_07560 are separated by 27 nucleotidesBNILDI_07560 and BNILDI_07565 are separated by 135 nucleotidesBNILDI_07565 and insB are separated by 128 nucleotides BNILDI_07555: fucP - L-fucose:H+ symporter permease, at 1,505,984 to 1,507,300 fucP BNILDI_07560: BNILDI_07560 - PfkB family carbohydrate kinase, at 1,507,328 to 1,508,080 _07560 BNILDI_07565: BNILDI_07565 - HTH-Tnp-IS1 domain-containing protein, at 1,508,216 to 1,508,275 _07565 BNILDI_07570: insB - Transposase and inactivated derivatives, IS1 family, at 1,508,404 to 1,508,697 insB Position (kb) 1507 1508 1509Strain fitness (log2 ratio) -2 -1 0 1 2at 1506.397 kb on + strand, within fucPat 1506.482 kb on - strand, within fucPat 1506.482 kb on - strand, within fucPat 1506.514 kb on - strand, within fucPat 1506.532 kb on + strand, within fucPat 1506.595 kb on + strand, within fucPat 1506.596 kb on - strand, within fucPat 1506.639 kb on - strand, within fucPat 1506.673 kb on + strand, within fucPat 1506.674 kb on - strand, within fucPat 1506.681 kb on + strand, within fucPat 1506.682 kb on - strand, within fucPat 1506.686 kb on - strand, within fucPat 1506.686 kb on - strand, within fucPat 1506.687 kb on + strand, within fucPat 1506.807 kb on - strand, within fucPat 1506.807 kb on - strand, within fucPat 1506.897 kb on + strand, within fucPat 1506.897 kb on + strand, within fucPat 1506.897 kb on + strand, within fucPat 1506.897 kb on + strand, within fucPat 1506.964 kb on + strand, within fucPat 1506.964 kb on + strand, within fucPat 1506.965 kb on - strand, within fucPat 1506.969 kb on + strand, within fucPat 1507.015 kb on + strand, within fucPat 1507.018 kb on - strand, within fucPat 1507.048 kb on + strand, within fucPat 1507.051 kb on - strand, within fucPat 1507.653 kb on + strand, within BNILDI_07560at 1507.925 kb on + strand, within BNILDI_07560at 1507.926 kb on - strand, within BNILDI_07560at 1507.931 kb on + strand, within BNILDI_07560at 1507.933 kb on + strand, within BNILDI_07560at 1507.934 kb on - strand, within BNILDI_07560at 1508.621 kb on + strand, within insBat 1508.681 kb on + strandat 1508.759 kb on + strandat 1508.759 kb on + strandat 1508.760 kb on - strandat 1508.762 kb on - strandat 1508.762 kb on - strandat 1508.763 kb on + strandat 1508.764 kb on - strandat 1508.764 kb on - strandat 1508.773 kb on + strandat 1508.962 kb on - strandat 1508.987 kb on - strandat 1508.987 kb on - strandat 1509.026 kb on + strandat 1509.026 kb on + strandat 1509.027 kb on - strandat 1509.031 kb on - strandat 1509.064 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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1,506,397 + fucP BNILDI_07555 0.31 +0.2
1,506,482 - fucP BNILDI_07555 0.38 +0.8
1,506,482 - fucP BNILDI_07555 0.38 -0.9
1,506,514 - fucP BNILDI_07555 0.40 -0.3
1,506,532 + fucP BNILDI_07555 0.42 -0.8
1,506,595 + fucP BNILDI_07555 0.46 +0.8
1,506,596 - fucP BNILDI_07555 0.46 -0.7
1,506,639 - fucP BNILDI_07555 0.50 +0.0
1,506,673 + fucP BNILDI_07555 0.52 +0.3
1,506,674 - fucP BNILDI_07555 0.52 +0.3
1,506,681 + fucP BNILDI_07555 0.53 -0.7
1,506,682 - fucP BNILDI_07555 0.53 -0.2
1,506,686 - fucP BNILDI_07555 0.53 -0.2
1,506,686 - fucP BNILDI_07555 0.53 +0.6
1,506,687 + fucP BNILDI_07555 0.53 +1.0
1,506,807 - fucP BNILDI_07555 0.62 +0.0
1,506,807 - fucP BNILDI_07555 0.62 +0.6
1,506,897 + fucP BNILDI_07555 0.69 -0.2
1,506,897 + fucP BNILDI_07555 0.69 -0.3
1,506,897 + fucP BNILDI_07555 0.69 +0.6
1,506,897 + fucP BNILDI_07555 0.69 +0.0
1,506,964 + fucP BNILDI_07555 0.74 -1.5
1,506,964 + fucP BNILDI_07555 0.74 -0.4
1,506,965 - fucP BNILDI_07555 0.74 +0.9
1,506,969 + fucP BNILDI_07555 0.75 -0.1
1,507,015 + fucP BNILDI_07555 0.78 +0.0
1,507,018 - fucP BNILDI_07555 0.79 -0.4
1,507,048 + fucP BNILDI_07555 0.81 -0.3
1,507,051 - fucP BNILDI_07555 0.81 +0.6
1,507,653 + BNILDI_07560 0.43 +0.3
1,507,925 + BNILDI_07560 0.79 +0.7
1,507,926 - BNILDI_07560 0.79 +0.8
1,507,931 + BNILDI_07560 0.80 +0.8
1,507,933 + BNILDI_07560 0.80 +0.7
1,507,934 - BNILDI_07560 0.80 +1.9
1,508,621 + insB BNILDI_07570 0.74 -0.3
1,508,681 + +1.2
1,508,759 + -0.6
1,508,759 + -2.4
1,508,760 - -0.4
1,508,762 - +0.8
1,508,762 - -0.5
1,508,763 + -0.4
1,508,764 - -0.3
1,508,764 - -0.6
1,508,773 + -1.3
1,508,962 - +0.8
1,508,987 - -0.8
1,508,987 - -0.4
1,509,026 + -0.6
1,509,026 + -0.3
1,509,027 - -0.3
1,509,031 - +0.7
1,509,064 - +1.6

Or see this region's nucleotide sequence