Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fucP and BNILDI_07560 are separated by 27 nucleotides BNILDI_07560 and BNILDI_07565 are separated by 135 nucleotides BNILDI_07565 and insB are separated by 128 nucleotides
BNILDI_07555: fucP - L-fucose:H+ symporter permease, at 1,505,984 to 1,507,300
fucP
BNILDI_07560: BNILDI_07560 - PfkB family carbohydrate kinase, at 1,507,328 to 1,508,080
_07560
BNILDI_07565: BNILDI_07565 - HTH-Tnp-IS1 domain-containing protein, at 1,508,216 to 1,508,275
_07565
BNILDI_07570: insB - Transposase and inactivated derivatives, IS1 family, at 1,508,404 to 1,508,697
insB
Position (kb)
1507
1508
1509 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1506.397 kb on + strand, within fucP at 1506.482 kb on - strand, within fucP at 1506.482 kb on - strand, within fucP at 1506.514 kb on - strand, within fucP at 1506.532 kb on + strand, within fucP at 1506.595 kb on + strand, within fucP at 1506.596 kb on - strand, within fucP at 1506.639 kb on - strand, within fucP at 1506.673 kb on + strand, within fucP at 1506.674 kb on - strand, within fucP at 1506.681 kb on + strand, within fucP at 1506.682 kb on - strand, within fucP at 1506.686 kb on - strand, within fucP at 1506.686 kb on - strand, within fucP at 1506.687 kb on + strand, within fucP at 1506.807 kb on - strand, within fucP at 1506.807 kb on - strand, within fucP at 1506.897 kb on + strand, within fucP at 1506.897 kb on + strand, within fucP at 1506.897 kb on + strand, within fucP at 1506.897 kb on + strand, within fucP at 1506.964 kb on + strand, within fucP at 1506.964 kb on + strand, within fucP at 1506.965 kb on - strand, within fucP at 1506.969 kb on + strand, within fucP at 1507.015 kb on + strand, within fucP at 1507.018 kb on - strand, within fucP at 1507.048 kb on + strand, within fucP at 1507.051 kb on - strand, within fucP at 1507.653 kb on + strand, within BNILDI_07560 at 1507.925 kb on + strand, within BNILDI_07560 at 1507.926 kb on - strand, within BNILDI_07560 at 1507.931 kb on + strand, within BNILDI_07560 at 1507.933 kb on + strand, within BNILDI_07560 at 1507.934 kb on - strand, within BNILDI_07560 at 1508.621 kb on + strand, within insB at 1508.681 kb on + strand at 1508.759 kb on + strand at 1508.759 kb on + strand at 1508.760 kb on - strand at 1508.762 kb on - strand at 1508.762 kb on - strand at 1508.763 kb on + strand at 1508.764 kb on - strand at 1508.764 kb on - strand at 1508.773 kb on + strand at 1508.962 kb on - strand at 1508.987 kb on - strand at 1508.987 kb on - strand at 1509.026 kb on + strand at 1509.026 kb on + strand at 1509.027 kb on - strand at 1509.031 kb on - strand at 1509.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 1,506,397 + fucP BNILDI_07555 0.31 +0.2 1,506,482 - fucP BNILDI_07555 0.38 +0.8 1,506,482 - fucP BNILDI_07555 0.38 -0.9 1,506,514 - fucP BNILDI_07555 0.40 -0.3 1,506,532 + fucP BNILDI_07555 0.42 -0.8 1,506,595 + fucP BNILDI_07555 0.46 +0.8 1,506,596 - fucP BNILDI_07555 0.46 -0.7 1,506,639 - fucP BNILDI_07555 0.50 +0.0 1,506,673 + fucP BNILDI_07555 0.52 +0.3 1,506,674 - fucP BNILDI_07555 0.52 +0.3 1,506,681 + fucP BNILDI_07555 0.53 -0.7 1,506,682 - fucP BNILDI_07555 0.53 -0.2 1,506,686 - fucP BNILDI_07555 0.53 -0.2 1,506,686 - fucP BNILDI_07555 0.53 +0.6 1,506,687 + fucP BNILDI_07555 0.53 +1.0 1,506,807 - fucP BNILDI_07555 0.62 +0.0 1,506,807 - fucP BNILDI_07555 0.62 +0.6 1,506,897 + fucP BNILDI_07555 0.69 -0.2 1,506,897 + fucP BNILDI_07555 0.69 -0.3 1,506,897 + fucP BNILDI_07555 0.69 +0.6 1,506,897 + fucP BNILDI_07555 0.69 +0.0 1,506,964 + fucP BNILDI_07555 0.74 -1.5 1,506,964 + fucP BNILDI_07555 0.74 -0.4 1,506,965 - fucP BNILDI_07555 0.74 +0.9 1,506,969 + fucP BNILDI_07555 0.75 -0.1 1,507,015 + fucP BNILDI_07555 0.78 +0.0 1,507,018 - fucP BNILDI_07555 0.79 -0.4 1,507,048 + fucP BNILDI_07555 0.81 -0.3 1,507,051 - fucP BNILDI_07555 0.81 +0.6 1,507,653 + BNILDI_07560 0.43 +0.3 1,507,925 + BNILDI_07560 0.79 +0.7 1,507,926 - BNILDI_07560 0.79 +0.8 1,507,931 + BNILDI_07560 0.80 +0.8 1,507,933 + BNILDI_07560 0.80 +0.7 1,507,934 - BNILDI_07560 0.80 +1.9 1,508,621 + insB BNILDI_07570 0.74 -0.3 1,508,681 + +1.2 1,508,759 + -0.6 1,508,759 + -2.4 1,508,760 - -0.4 1,508,762 - +0.8 1,508,762 - -0.5 1,508,763 + -0.4 1,508,764 - -0.3 1,508,764 - -0.6 1,508,773 + -1.3 1,508,962 - +0.8 1,508,987 - -0.8 1,508,987 - -0.4 1,509,026 + -0.6 1,509,026 + -0.3 1,509,027 - -0.3 1,509,031 - +0.7 1,509,064 - +1.6
Or see this region's nucleotide sequence