Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_07495 and BNILDI_07500 are separated by 113 nucleotides BNILDI_07500 and BNILDI_07505 are separated by 464 nucleotides
BNILDI_07495: BNILDI_07495 - Protein encoded within IS, at 1,495,444 to 1,495,719
_07495
BNILDI_07500: BNILDI_07500 - Transposase, at 1,495,833 to 1,496,048
_07500
BNILDI_07505: BNILDI_07505 - IclR family transcriptional regulator, at 1,496,513 to 1,497,277
_07505
Position (kb)
1495
1496
1497 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1494.876 kb on + strand at 1495.068 kb on - strand at 1495.086 kb on + strand at 1495.087 kb on - strand at 1495.106 kb on + strand at 1495.106 kb on + strand at 1495.107 kb on - strand at 1495.183 kb on - strand at 1495.183 kb on - strand at 1495.190 kb on + strand at 1495.219 kb on + strand at 1495.253 kb on - strand at 1495.253 kb on - strand at 1495.282 kb on - strand at 1495.304 kb on + strand at 1495.318 kb on + strand at 1495.336 kb on + strand at 1495.336 kb on + strand at 1495.337 kb on - strand at 1495.338 kb on + strand at 1495.338 kb on + strand at 1495.338 kb on + strand at 1495.339 kb on - strand at 1495.339 kb on - strand at 1495.339 kb on - strand at 1495.339 kb on - strand at 1495.408 kb on + strand at 1495.835 kb on - strand at 1495.866 kb on - strand, within BNILDI_07500 at 1495.870 kb on - strand, within BNILDI_07500 at 1495.922 kb on + strand, within BNILDI_07500 at 1496.071 kb on + strand at 1496.071 kb on + strand at 1496.074 kb on - strand at 1496.204 kb on - strand at 1496.233 kb on - strand at 1496.243 kb on + strand at 1496.243 kb on + strand at 1496.277 kb on + strand at 1496.285 kb on - strand at 1496.423 kb on - strand at 1496.624 kb on - strand, within BNILDI_07505 at 1496.765 kb on - strand, within BNILDI_07505 at 1496.841 kb on - strand, within BNILDI_07505 at 1496.864 kb on - strand, within BNILDI_07505 at 1496.933 kb on - strand, within BNILDI_07505 at 1496.974 kb on + strand, within BNILDI_07505 at 1497.003 kb on - strand, within BNILDI_07505
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 1,494,876 + +0.5 1,495,068 - -0.1 1,495,086 + +0.7 1,495,087 - -0.7 1,495,106 + +1.0 1,495,106 + -0.8 1,495,107 - +0.2 1,495,183 - +1.9 1,495,183 - +0.4 1,495,190 + -0.4 1,495,219 + +0.8 1,495,253 - +1.2 1,495,253 - -0.6 1,495,282 - -0.6 1,495,304 + +1.9 1,495,318 + +0.4 1,495,336 + -2.0 1,495,336 + +0.3 1,495,337 - +3.5 1,495,338 + -0.2 1,495,338 + -0.5 1,495,338 + -0.6 1,495,339 - -0.5 1,495,339 - -0.1 1,495,339 - -1.1 1,495,339 - -0.1 1,495,408 + -0.2 1,495,835 - -1.1 1,495,866 - BNILDI_07500 0.15 +0.2 1,495,870 - BNILDI_07500 0.17 -1.1 1,495,922 + BNILDI_07500 0.41 -1.3 1,496,071 + +0.3 1,496,071 + -1.8 1,496,074 - -1.9 1,496,204 - -1.7 1,496,233 - -0.3 1,496,243 + -0.3 1,496,243 + -0.5 1,496,277 + -0.9 1,496,285 - +0.3 1,496,423 - -0.3 1,496,624 - BNILDI_07505 0.15 -0.5 1,496,765 - BNILDI_07505 0.33 -1.7 1,496,841 - BNILDI_07505 0.43 -2.0 1,496,864 - BNILDI_07505 0.46 +0.9 1,496,933 - BNILDI_07505 0.55 -1.7 1,496,974 + BNILDI_07505 0.60 +0.9 1,497,003 - BNILDI_07505 0.64 +0.3
Or see this region's nucleotide sequence