Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjfL and yjfM are separated by 9 nucleotides yjfM and yjfC are separated by 2 nucleotides yjfC and aidB are separated by 83 nucleotides
BNILDI_07030: yjfL - UPF0719 inner membrane protein YjfL, at 1,406,722 to 1,407,120
yjfL
BNILDI_07035: yjfM - Uncharacterized protein YjfM, at 1,407,130 to 1,407,768
yjfM
BNILDI_07040: yjfC - Putative acid--amine ligase YjfC, at 1,407,771 to 1,408,934
yjfC
BNILDI_07045: aidB - isovaleryl-CoA dehydrogenase, at 1,409,018 to 1,410,643
aidB
Position (kb) 1407
1408
1409 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1407.008 kb on - strand, within yjfL at 1407.108 kb on + strand at 1407.109 kb on - strand at 1407.118 kb on + strand at 1407.445 kb on - strand, within yjfM at 1407.445 kb on - strand, within yjfM at 1407.484 kb on + strand, within yjfM at 1407.485 kb on - strand, within yjfM at 1407.488 kb on - strand, within yjfM at 1407.579 kb on + strand, within yjfM at 1407.580 kb on - strand, within yjfM at 1407.842 kb on + strand at 1407.842 kb on + strand at 1408.018 kb on - strand, within yjfC at 1408.146 kb on + strand, within yjfC at 1408.158 kb on + strand, within yjfC at 1408.260 kb on - strand, within yjfC at 1408.269 kb on + strand, within yjfC at 1408.270 kb on - strand, within yjfC at 1408.335 kb on + strand, within yjfC at 1408.383 kb on + strand, within yjfC at 1408.383 kb on + strand, within yjfC at 1408.418 kb on - strand, within yjfC at 1408.457 kb on + strand, within yjfC at 1408.560 kb on - strand, within yjfC at 1408.563 kb on - strand, within yjfC at 1408.571 kb on - strand, within yjfC at 1408.665 kb on + strand, within yjfC at 1408.665 kb on + strand, within yjfC at 1408.665 kb on + strand, within yjfC at 1408.666 kb on - strand, within yjfC at 1408.666 kb on - strand, within yjfC at 1408.674 kb on - strand, within yjfC at 1408.755 kb on + strand, within yjfC at 1408.756 kb on - strand, within yjfC at 1408.777 kb on - strand, within yjfC at 1408.777 kb on - strand, within yjfC at 1408.815 kb on + strand, within yjfC at 1408.815 kb on + strand, within yjfC at 1408.815 kb on + strand, within yjfC at 1408.815 kb on + strand, within yjfC at 1408.816 kb on - strand, within yjfC at 1408.920 kb on + strand at 1408.920 kb on + strand at 1408.921 kb on - strand at 1408.921 kb on - strand at 1408.943 kb on + strand at 1408.943 kb on + strand at 1408.985 kb on + strand at 1408.985 kb on + strand at 1408.985 kb on + strand at 1408.986 kb on - strand at 1409.301 kb on + strand, within aidB at 1409.301 kb on + strand, within aidB at 1409.301 kb on + strand, within aidB at 1409.302 kb on - strand, within aidB at 1409.305 kb on + strand, within aidB at 1409.306 kb on - strand, within aidB at 1409.306 kb on - strand, within aidB at 1409.413 kb on - strand, within aidB at 1409.454 kb on + strand, within aidB at 1409.499 kb on + strand, within aidB at 1409.524 kb on - strand, within aidB at 1409.656 kb on + strand, within aidB at 1409.657 kb on - strand, within aidB at 1409.794 kb on + strand, within aidB at 1409.795 kb on - strand, within aidB at 1409.795 kb on - strand, within aidB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 1,407,008 - yjfL BNILDI_07030 0.72 +0.6 1,407,108 + -0.1 1,407,109 - +1.1 1,407,118 + +0.9 1,407,445 - yjfM BNILDI_07035 0.49 +0.8 1,407,445 - yjfM BNILDI_07035 0.49 -1.5 1,407,484 + yjfM BNILDI_07035 0.55 -0.7 1,407,485 - yjfM BNILDI_07035 0.56 +0.1 1,407,488 - yjfM BNILDI_07035 0.56 -0.2 1,407,579 + yjfM BNILDI_07035 0.70 +0.1 1,407,580 - yjfM BNILDI_07035 0.70 -0.1 1,407,842 + -0.7 1,407,842 + -1.4 1,408,018 - yjfC BNILDI_07040 0.21 -0.5 1,408,146 + yjfC BNILDI_07040 0.32 -1.1 1,408,158 + yjfC BNILDI_07040 0.33 +1.3 1,408,260 - yjfC BNILDI_07040 0.42 -0.1 1,408,269 + yjfC BNILDI_07040 0.43 +1.8 1,408,270 - yjfC BNILDI_07040 0.43 -0.4 1,408,335 + yjfC BNILDI_07040 0.48 +0.3 1,408,383 + yjfC BNILDI_07040 0.53 -1.3 1,408,383 + yjfC BNILDI_07040 0.53 +0.4 1,408,418 - yjfC BNILDI_07040 0.56 -0.9 1,408,457 + yjfC BNILDI_07040 0.59 +0.2 1,408,560 - yjfC BNILDI_07040 0.68 +0.3 1,408,563 - yjfC BNILDI_07040 0.68 -0.4 1,408,571 - yjfC BNILDI_07040 0.69 -0.4 1,408,665 + yjfC BNILDI_07040 0.77 -0.1 1,408,665 + yjfC BNILDI_07040 0.77 -0.0 1,408,665 + yjfC BNILDI_07040 0.77 -0.0 1,408,666 - yjfC BNILDI_07040 0.77 -0.8 1,408,666 - yjfC BNILDI_07040 0.77 -0.0 1,408,674 - yjfC BNILDI_07040 0.78 -1.3 1,408,755 + yjfC BNILDI_07040 0.85 +0.6 1,408,756 - yjfC BNILDI_07040 0.85 +0.3 1,408,777 - yjfC BNILDI_07040 0.86 +0.1 1,408,777 - yjfC BNILDI_07040 0.86 -2.5 1,408,815 + yjfC BNILDI_07040 0.90 +3.5 1,408,815 + yjfC BNILDI_07040 0.90 +0.6 1,408,815 + yjfC BNILDI_07040 0.90 -0.7 1,408,815 + yjfC BNILDI_07040 0.90 -0.9 1,408,816 - yjfC BNILDI_07040 0.90 -0.2 1,408,920 + +0.6 1,408,920 + -2.6 1,408,921 - -0.0 1,408,921 - -0.9 1,408,943 + -1.0 1,408,943 + -0.6 1,408,985 + -0.4 1,408,985 + -1.9 1,408,985 + +0.5 1,408,986 - -0.3 1,409,301 + aidB BNILDI_07045 0.17 +0.0 1,409,301 + aidB BNILDI_07045 0.17 -0.7 1,409,301 + aidB BNILDI_07045 0.17 -0.6 1,409,302 - aidB BNILDI_07045 0.17 +0.9 1,409,305 + aidB BNILDI_07045 0.18 +0.4 1,409,306 - aidB BNILDI_07045 0.18 +0.0 1,409,306 - aidB BNILDI_07045 0.18 -0.2 1,409,413 - aidB BNILDI_07045 0.24 -0.5 1,409,454 + aidB BNILDI_07045 0.27 -0.6 1,409,499 + aidB BNILDI_07045 0.30 +0.7 1,409,524 - aidB BNILDI_07045 0.31 -0.2 1,409,656 + aidB BNILDI_07045 0.39 +0.5 1,409,657 - aidB BNILDI_07045 0.39 -0.3 1,409,794 + aidB BNILDI_07045 0.48 -0.9 1,409,795 - aidB BNILDI_07045 0.48 +0.0 1,409,795 - aidB BNILDI_07045 0.48 +1.3
Or see this region's nucleotide sequence