Strain Fitness in Escherichia coli ECRC62 around BNILDI_06910

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntasd and rsgA are separated by 96 nucleotidesrsgA and orn are separated by 94 nucleotidesorn and Gly_trna are separated by 210 nucleotidesGly_trna and Gly_trna are separated by 36 nucleotides BNILDI_06905: asd - archaetidylserine decarboxylase, at 1,384,134 to 1,385,102 asd BNILDI_06910: rsgA - small ribosomal subunit biogenesis GTPase RsgA, at 1,385,199 to 1,386,251 rsgA BNILDI_06915: orn - oligoribonuclease, at 1,386,346 to 1,386,891 orn BNILDI_06920: Gly_trna - tRNA-Gly(gcc), at 1,387,102 to 1,387,177 _trna BNILDI_06925: Gly_trna - tRNA-Gly(gcc), at 1,387,214 to 1,387,289 _trna Position (kb) 1385 1386 1387Strain fitness (log2 ratio) -1 0 1 2at 1384.249 kb on - strand, within asdat 1385.145 kb on - strandat 1385.145 kb on - strandat 1385.189 kb on - strandat 1385.194 kb on - strandat 1385.194 kb on - strandat 1386.292 kb on - strandat 1386.297 kb on - strandat 1386.318 kb on + strandat 1386.318 kb on + strandat 1386.909 kb on + strandat 1386.909 kb on + strandat 1386.910 kb on - strandat 1387.078 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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1,384,249 - asd BNILDI_06905 0.12 +0.1
1,385,145 - +1.9
1,385,145 - +0.2
1,385,189 - +0.3
1,385,194 - -0.1
1,385,194 - +0.2
1,386,292 - -0.2
1,386,297 - +0.3
1,386,318 + -0.3
1,386,318 + +0.7
1,386,909 + -1.3
1,386,909 + +0.2
1,386,910 - -0.1
1,387,078 + -1.1

Or see this region's nucleotide sequence