Strain Fitness in Escherichia coli ECRC62 around BNILDI_05925

Experiment: Bas61

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttuf and secE are separated by 229 nucleotidessecE and nusG are separated by 1 nucleotidesnusG and rplK are separated by 158 nucleotides BNILDI_05920: tuf - elongation factor Tu, at 1,175,579 to 1,176,763 tuf BNILDI_05925: secE - preprotein translocase subunit SecE, at 1,176,993 to 1,177,376 secE BNILDI_05930: nusG - transcription termination/antitermination protein NusG, at 1,177,378 to 1,177,923 nusG BNILDI_05935: rplK - 50S ribosomal protein L11, at 1,178,082 to 1,178,510 rplK Position (kb) 1176 1177 1178Strain fitness (log2 ratio) -1 0 1at 1176.744 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
remove
1,176,744 + -1.2

Or see this region's nucleotide sequence