Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_05020 and rarD are separated by 46 nucleotides rarD and yigI are separated by 51 nucleotides yigI and pldA are separated by 164 nucleotides
BNILDI_05020: BNILDI_05020 - Membrane protein, at 995,078 to 995,377
_05020
BNILDI_05025: rarD - EamA family transporter RarD, at 995,424 to 996,311
rarD
BNILDI_05030: yigI - thioesterase family protein, at 996,363 to 996,830
yigI
BNILDI_05035: pldA - phospholipase A, at 996,995 to 997,864
pldA
Position (kb) 996
997 Strain fitness (log2 ratio) -2
-1
0
1
2 at 995.531 kb on - strand, within rarD at 995.531 kb on - strand, within rarD at 995.773 kb on - strand, within rarD at 995.855 kb on + strand, within rarD at 995.990 kb on + strand, within rarD at 995.990 kb on + strand, within rarD at 995.990 kb on + strand, within rarD at 995.995 kb on + strand, within rarD at 996.018 kb on - strand, within rarD at 996.128 kb on - strand, within rarD at 996.217 kb on + strand, within rarD at 996.218 kb on - strand, within rarD at 996.221 kb on - strand, within rarD at 996.235 kb on + strand at 996.258 kb on - strand at 996.279 kb on + strand at 996.280 kb on - strand at 996.283 kb on - strand at 996.356 kb on + strand at 996.369 kb on + strand at 996.369 kb on + strand at 996.376 kb on + strand at 996.401 kb on - strand at 996.401 kb on - strand at 996.401 kb on - strand at 996.479 kb on + strand, within yigI at 996.508 kb on + strand, within yigI at 996.509 kb on - strand, within yigI at 996.556 kb on - strand, within yigI at 996.593 kb on + strand, within yigI at 996.594 kb on - strand, within yigI at 996.728 kb on - strand, within yigI at 996.773 kb on - strand, within yigI at 996.830 kb on + strand at 996.831 kb on - strand at 996.831 kb on - strand at 996.839 kb on + strand at 996.840 kb on - strand at 996.899 kb on - strand at 996.913 kb on - strand at 996.928 kb on - strand at 996.928 kb on - strand at 996.928 kb on - strand at 996.931 kb on + strand at 996.931 kb on + strand at 996.931 kb on + strand at 996.932 kb on - strand at 996.932 kb on - strand at 996.932 kb on - strand at 996.932 kb on - strand at 996.935 kb on + strand at 996.936 kb on - strand at 996.941 kb on - strand at 996.970 kb on + strand at 996.970 kb on + strand at 996.971 kb on - strand at 996.971 kb on - strand at 997.030 kb on + strand at 997.031 kb on - strand at 997.039 kb on + strand at 997.047 kb on + strand at 997.047 kb on + strand at 997.047 kb on + strand at 997.048 kb on - strand at 997.048 kb on - strand at 997.048 kb on - strand at 997.048 kb on - strand at 997.049 kb on + strand at 997.049 kb on + strand at 997.049 kb on + strand at 997.049 kb on + strand at 997.049 kb on + strand at 997.049 kb on + strand at 997.050 kb on - strand at 997.050 kb on - strand at 997.050 kb on - strand at 997.106 kb on - strand, within pldA at 997.118 kb on - strand, within pldA at 997.157 kb on + strand, within pldA at 997.170 kb on - strand, within pldA at 997.179 kb on - strand, within pldA at 997.179 kb on - strand, within pldA at 997.179 kb on - strand, within pldA at 997.179 kb on - strand, within pldA at 997.179 kb on - strand, within pldA at 997.220 kb on + strand, within pldA at 997.255 kb on - strand, within pldA at 997.255 kb on - strand, within pldA at 997.331 kb on - strand, within pldA at 997.394 kb on + strand, within pldA at 997.394 kb on + strand, within pldA at 997.395 kb on - strand, within pldA at 997.472 kb on + strand, within pldA at 997.473 kb on - strand, within pldA at 997.474 kb on + strand, within pldA at 997.475 kb on - strand, within pldA at 997.529 kb on + strand, within pldA at 997.531 kb on + strand, within pldA at 997.583 kb on + strand, within pldA at 997.583 kb on + strand, within pldA at 997.583 kb on + strand, within pldA at 997.584 kb on - strand, within pldA at 997.597 kb on + strand, within pldA at 997.625 kb on + strand, within pldA at 997.625 kb on + strand, within pldA at 997.626 kb on - strand, within pldA at 997.626 kb on - strand, within pldA at 997.626 kb on - strand, within pldA at 997.626 kb on - strand, within pldA at 997.627 kb on + strand, within pldA at 997.628 kb on - strand, within pldA at 997.634 kb on + strand, within pldA at 997.635 kb on - strand, within pldA at 997.637 kb on + strand, within pldA at 997.638 kb on - strand, within pldA at 997.638 kb on - strand, within pldA at 997.694 kb on + strand, within pldA at 997.695 kb on - strand, within pldA at 997.695 kb on - strand, within pldA at 997.734 kb on + strand, within pldA at 997.734 kb on + strand, within pldA at 997.735 kb on - strand, within pldA at 997.735 kb on - strand, within pldA at 997.735 kb on - strand, within pldA at 997.766 kb on + strand, within pldA at 997.766 kb on + strand, within pldA at 997.766 kb on + strand, within pldA at 997.766 kb on + strand, within pldA at 997.778 kb on + strand at 997.808 kb on + strand at 997.809 kb on - strand at 997.810 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 995,531 - rarD BNILDI_05025 0.12 +0.2 995,531 - rarD BNILDI_05025 0.12 -0.0 995,773 - rarD BNILDI_05025 0.39 +0.2 995,855 + rarD BNILDI_05025 0.49 +0.0 995,990 + rarD BNILDI_05025 0.64 +0.9 995,990 + rarD BNILDI_05025 0.64 -0.9 995,990 + rarD BNILDI_05025 0.64 -0.6 995,995 + rarD BNILDI_05025 0.64 -0.0 996,018 - rarD BNILDI_05025 0.67 -0.7 996,128 - rarD BNILDI_05025 0.79 -1.7 996,217 + rarD BNILDI_05025 0.89 +0.2 996,218 - rarD BNILDI_05025 0.89 -0.2 996,221 - rarD BNILDI_05025 0.90 +0.4 996,235 + -0.4 996,258 - +0.2 996,279 + -1.2 996,280 - -1.1 996,283 - -0.0 996,356 + -1.5 996,369 + -0.2 996,369 + +0.2 996,376 + -0.1 996,401 - -0.0 996,401 - -0.5 996,401 - -0.2 996,479 + yigI BNILDI_05030 0.25 -1.0 996,508 + yigI BNILDI_05030 0.31 +1.1 996,509 - yigI BNILDI_05030 0.31 +2.0 996,556 - yigI BNILDI_05030 0.41 -0.4 996,593 + yigI BNILDI_05030 0.49 +1.2 996,594 - yigI BNILDI_05030 0.49 -1.6 996,728 - yigI BNILDI_05030 0.78 -0.4 996,773 - yigI BNILDI_05030 0.88 +1.3 996,830 + -1.2 996,831 - +0.4 996,831 - -0.7 996,839 + -0.5 996,840 - -1.5 996,899 - -0.4 996,913 - -1.6 996,928 - -0.2 996,928 - -0.2 996,928 - -2.4 996,931 + -0.7 996,931 + -0.3 996,931 + -0.3 996,932 - +0.1 996,932 - -0.0 996,932 - -1.2 996,932 - +0.1 996,935 + -0.6 996,936 - +0.3 996,941 - -0.3 996,970 + +0.3 996,970 + -0.5 996,971 - -0.4 996,971 - -0.5 997,030 + -0.5 997,031 - -0.3 997,039 + -0.7 997,047 + -1.5 997,047 + +0.2 997,047 + +0.2 997,048 - +0.1 997,048 - -0.6 997,048 - -0.9 997,048 - +0.8 997,049 + -0.1 997,049 + -0.1 997,049 + +0.2 997,049 + +0.4 997,049 + +2.0 997,049 + +1.2 997,050 - -0.0 997,050 - +0.9 997,050 - -0.7 997,106 - pldA BNILDI_05035 0.13 -0.4 997,118 - pldA BNILDI_05035 0.14 +0.4 997,157 + pldA BNILDI_05035 0.19 -0.1 997,170 - pldA BNILDI_05035 0.20 -0.8 997,179 - pldA BNILDI_05035 0.21 +0.9 997,179 - pldA BNILDI_05035 0.21 -1.4 997,179 - pldA BNILDI_05035 0.21 +1.4 997,179 - pldA BNILDI_05035 0.21 -0.2 997,179 - pldA BNILDI_05035 0.21 +2.0 997,220 + pldA BNILDI_05035 0.26 -0.1 997,255 - pldA BNILDI_05035 0.30 +0.5 997,255 - pldA BNILDI_05035 0.30 +1.1 997,331 - pldA BNILDI_05035 0.39 +0.8 997,394 + pldA BNILDI_05035 0.46 +0.4 997,394 + pldA BNILDI_05035 0.46 -0.4 997,395 - pldA BNILDI_05035 0.46 -0.0 997,472 + pldA BNILDI_05035 0.55 -0.4 997,473 - pldA BNILDI_05035 0.55 +1.0 997,474 + pldA BNILDI_05035 0.55 -0.1 997,475 - pldA BNILDI_05035 0.55 +0.4 997,529 + pldA BNILDI_05035 0.61 -0.3 997,531 + pldA BNILDI_05035 0.62 -0.1 997,583 + pldA BNILDI_05035 0.68 -0.4 997,583 + pldA BNILDI_05035 0.68 +1.4 997,583 + pldA BNILDI_05035 0.68 -0.0 997,584 - pldA BNILDI_05035 0.68 -1.2 997,597 + pldA BNILDI_05035 0.69 -0.2 997,625 + pldA BNILDI_05035 0.72 -0.0 997,625 + pldA BNILDI_05035 0.72 -1.0 997,626 - pldA BNILDI_05035 0.73 +0.8 997,626 - pldA BNILDI_05035 0.73 -0.1 997,626 - pldA BNILDI_05035 0.73 -1.4 997,626 - pldA BNILDI_05035 0.73 +0.1 997,627 + pldA BNILDI_05035 0.73 +0.1 997,628 - pldA BNILDI_05035 0.73 +0.2 997,634 + pldA BNILDI_05035 0.73 -0.4 997,635 - pldA BNILDI_05035 0.74 -0.6 997,637 + pldA BNILDI_05035 0.74 +0.8 997,638 - pldA BNILDI_05035 0.74 -0.1 997,638 - pldA BNILDI_05035 0.74 +0.1 997,694 + pldA BNILDI_05035 0.80 -0.2 997,695 - pldA BNILDI_05035 0.80 -0.4 997,695 - pldA BNILDI_05035 0.80 +1.4 997,734 + pldA BNILDI_05035 0.85 -1.2 997,734 + pldA BNILDI_05035 0.85 -0.8 997,735 - pldA BNILDI_05035 0.85 -0.0 997,735 - pldA BNILDI_05035 0.85 -0.5 997,735 - pldA BNILDI_05035 0.85 +0.3 997,766 + pldA BNILDI_05035 0.89 -0.3 997,766 + pldA BNILDI_05035 0.89 +0.8 997,766 + pldA BNILDI_05035 0.89 -0.1 997,766 + pldA BNILDI_05035 0.89 +1.1 997,778 + +0.3 997,808 + -1.2 997,809 - -0.6 997,810 + -0.1
Or see this region's nucleotide sequence