Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt coaBC and dut overlap by 23 nucleotides dut and slmA are separated by 106 nucleotides slmA and pyrE are separated by 36 nucleotides pyrE and pyrL are separated by 11 nucleotides pyrL and rph are separated by 15 nucleotides
BNILDI_04020: coaBC - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 794,383 to 795,603
coaBC
BNILDI_04025: dut - dUTP diphosphatase, at 795,581 to 796,039
dut
BNILDI_04030: slmA - nucleoid occlusion factor SlmA, at 796,146 to 796,742
slmA
BNILDI_04035: pyrE - Orotate phosphoribosyltransferase, at 796,779 to 797,420
pyrE
BNILDI_04040: pyrL - Putative PyrE leader peptide, at 797,432 to 797,470
pyrL
BNILDI_04045: rph - ribonuclease PH, at 797,486 to 798,202
rph
Position (kb) 796
797 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 796.044 kb on + strand at 796.044 kb on + strand at 796.044 kb on + strand at 796.045 kb on - strand at 796.064 kb on + strand at 796.064 kb on + strand at 796.065 kb on - strand at 796.097 kb on - strand at 796.189 kb on + strand at 796.190 kb on - strand at 796.291 kb on - strand, within slmA at 796.358 kb on + strand, within slmA at 796.448 kb on + strand, within slmA at 796.518 kb on - strand, within slmA at 796.561 kb on + strand, within slmA at 796.596 kb on + strand, within slmA at 796.650 kb on - strand, within slmA at 796.650 kb on - strand, within slmA at 796.679 kb on + strand, within slmA at 796.680 kb on - strand, within slmA at 796.740 kb on + strand at 796.743 kb on + strand at 796.743 kb on + strand at 796.744 kb on - strand at 796.781 kb on - strand at 796.900 kb on + strand, within pyrE at 796.901 kb on - strand, within pyrE at 796.901 kb on - strand, within pyrE at 796.901 kb on - strand, within pyrE at 796.901 kb on - strand, within pyrE at 796.901 kb on - strand, within pyrE at 796.901 kb on - strand, within pyrE at 797.052 kb on + strand, within pyrE at 797.052 kb on + strand, within pyrE at 797.061 kb on + strand, within pyrE at 797.062 kb on - strand, within pyrE at 797.073 kb on + strand, within pyrE at 797.207 kb on - strand, within pyrE at 797.300 kb on + strand, within pyrE at 797.300 kb on + strand, within pyrE at 797.324 kb on - strand, within pyrE at 797.410 kb on + strand at 797.516 kb on + strand at 797.517 kb on - strand at 797.517 kb on - strand at 797.561 kb on + strand, within rph at 797.636 kb on + strand, within rph at 797.637 kb on - strand, within rph at 797.673 kb on + strand, within rph at 797.703 kb on - strand, within rph at 797.727 kb on - strand, within rph
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 796,044 + -1.0 796,044 + -0.7 796,044 + +0.8 796,045 - +0.4 796,064 + +0.0 796,064 + -0.6 796,065 - -1.4 796,097 - -0.8 796,189 + -0.3 796,190 - +0.8 796,291 - slmA BNILDI_04030 0.24 +4.0 796,358 + slmA BNILDI_04030 0.36 -0.1 796,448 + slmA BNILDI_04030 0.51 -0.0 796,518 - slmA BNILDI_04030 0.62 +1.0 796,561 + slmA BNILDI_04030 0.70 +0.5 796,596 + slmA BNILDI_04030 0.75 +0.9 796,650 - slmA BNILDI_04030 0.84 -0.7 796,650 - slmA BNILDI_04030 0.84 +0.8 796,679 + slmA BNILDI_04030 0.89 -0.8 796,680 - slmA BNILDI_04030 0.89 +2.1 796,740 + -0.1 796,743 + +1.6 796,743 + +0.3 796,744 - +0.4 796,781 - -0.7 796,900 + pyrE BNILDI_04035 0.19 -0.7 796,901 - pyrE BNILDI_04035 0.19 +0.4 796,901 - pyrE BNILDI_04035 0.19 +0.2 796,901 - pyrE BNILDI_04035 0.19 -0.0 796,901 - pyrE BNILDI_04035 0.19 +0.5 796,901 - pyrE BNILDI_04035 0.19 +1.1 796,901 - pyrE BNILDI_04035 0.19 -0.2 797,052 + pyrE BNILDI_04035 0.43 -0.6 797,052 + pyrE BNILDI_04035 0.43 -0.6 797,061 + pyrE BNILDI_04035 0.44 +0.6 797,062 - pyrE BNILDI_04035 0.44 -0.8 797,073 + pyrE BNILDI_04035 0.46 -0.2 797,207 - pyrE BNILDI_04035 0.67 -1.6 797,300 + pyrE BNILDI_04035 0.81 +0.2 797,300 + pyrE BNILDI_04035 0.81 -0.2 797,324 - pyrE BNILDI_04035 0.85 -1.4 797,410 + -0.2 797,516 + -0.8 797,517 - -0.8 797,517 - -0.6 797,561 + rph BNILDI_04045 0.10 +0.4 797,636 + rph BNILDI_04045 0.21 -0.4 797,637 - rph BNILDI_04045 0.21 +0.0 797,673 + rph BNILDI_04045 0.26 +0.8 797,703 - rph BNILDI_04045 0.30 +0.8 797,727 - rph BNILDI_04045 0.34 +2.0
Or see this region's nucleotide sequence