Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bcsE and bcsF overlap by 4 nucleotides bcsF and bcsG overlap by 4 nucleotides bcsG and bcsG are separated by 24 nucleotides bcsG and BNILDI_03455 are separated by 86 nucleotides BNILDI_03455 and BNILDI_03465 are separated by 62 nucleotides BNILDI_03465 and BNILDI_03470 are separated by 4 nucleotides
BNILDI_03435: bcsE - cellulose biosynthesis protein BcsE, at 676,176 to 677,735
bcsE
BNILDI_03440: bcsF - cellulose biosynthesis protein BcsF, at 677,732 to 677,923
bcsF
BNILDI_03445: bcsG - cellulose biosynthesis protein BcsG, at 677,920 to 678,660
bcsG
BNILDI_03450: bcsG - cellulose biosynthesis protein BcsG, at 678,685 to 679,599
bcsG
BNILDI_03455: BNILDI_03455 - Type I toxin-antitoxin system toxin Ldr family protein, at 679,686 to 679,793
_03455
BNILDI_03465: BNILDI_03465 - hypothetical protein, at 679,856 to 680,164
_03465
BNILDI_03470: BNILDI_03470 - Type I toxin-antitoxin system toxin Ldr family protein, at 680,169 to 680,276
_03470
Position (kb) 678
679
680 Strain fitness (log2 ratio) -1
0
1 at 677.708 kb on - strand at 677.782 kb on - strand, within bcsF at 677.838 kb on + strand, within bcsF at 677.838 kb on + strand, within bcsF at 677.838 kb on + strand, within bcsF at 677.838 kb on + strand, within bcsF at 677.839 kb on - strand, within bcsF at 677.839 kb on - strand, within bcsF at 677.839 kb on - strand, within bcsF at 677.839 kb on - strand, within bcsF at 677.864 kb on + strand, within bcsF at 677.940 kb on + strand at 677.969 kb on - strand at 678.039 kb on + strand, within bcsG at 678.040 kb on - strand, within bcsG at 678.040 kb on - strand, within bcsG at 678.040 kb on - strand, within bcsG at 678.192 kb on - strand, within bcsG at 678.233 kb on - strand, within bcsG at 678.237 kb on - strand, within bcsG at 678.259 kb on - strand, within bcsG at 678.262 kb on - strand, within bcsG at 678.293 kb on + strand, within bcsG at 678.293 kb on + strand, within bcsG at 678.293 kb on + strand, within bcsG at 678.294 kb on - strand, within bcsG at 678.353 kb on + strand, within bcsG at 678.354 kb on - strand, within bcsG at 678.359 kb on + strand, within bcsG at 678.371 kb on + strand, within bcsG at 678.371 kb on + strand, within bcsG at 678.372 kb on - strand, within bcsG at 678.372 kb on - strand, within bcsG at 678.375 kb on + strand, within bcsG at 678.376 kb on - strand, within bcsG at 678.376 kb on - strand, within bcsG at 678.376 kb on - strand, within bcsG at 678.432 kb on - strand, within bcsG at 678.498 kb on + strand, within bcsG at 678.552 kb on + strand, within bcsG at 678.559 kb on + strand, within bcsG at 678.559 kb on + strand, within bcsG at 678.560 kb on - strand, within bcsG at 678.560 kb on - strand, within bcsG at 678.560 kb on - strand, within bcsG at 678.561 kb on + strand, within bcsG at 678.579 kb on + strand, within bcsG at 678.629 kb on + strand at 678.668 kb on + strand at 678.669 kb on - strand at 678.669 kb on - strand at 678.669 kb on - strand at 678.669 kb on - strand at 678.748 kb on + strand at 678.749 kb on - strand at 678.808 kb on - strand, within bcsG at 678.829 kb on - strand, within bcsG at 678.838 kb on + strand, within bcsG at 679.087 kb on + strand, within bcsG at 679.088 kb on - strand, within bcsG at 679.088 kb on - strand, within bcsG at 679.088 kb on - strand, within bcsG at 679.147 kb on + strand, within bcsG at 679.218 kb on + strand, within bcsG at 679.219 kb on - strand, within bcsG at 679.280 kb on + strand, within bcsG at 679.289 kb on + strand, within bcsG at 679.289 kb on + strand, within bcsG at 679.289 kb on + strand, within bcsG at 679.312 kb on - strand, within bcsG at 679.529 kb on + strand at 679.529 kb on + strand at 679.530 kb on - strand at 679.530 kb on - strand at 679.530 kb on - strand at 679.556 kb on - strand at 679.598 kb on - strand at 679.718 kb on + strand, within BNILDI_03455 at 679.718 kb on + strand, within BNILDI_03455 at 679.793 kb on + strand at 679.838 kb on + strand at 679.839 kb on - strand at 679.936 kb on + strand, within BNILDI_03465 at 679.991 kb on - strand, within BNILDI_03465 at 680.293 kb on + strand at 680.474 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 677,708 - -1.6 677,782 - bcsF BNILDI_03440 0.26 +0.2 677,838 + bcsF BNILDI_03440 0.55 +0.3 677,838 + bcsF BNILDI_03440 0.55 -0.7 677,838 + bcsF BNILDI_03440 0.55 -0.2 677,838 + bcsF BNILDI_03440 0.55 +0.4 677,839 - bcsF BNILDI_03440 0.56 -0.3 677,839 - bcsF BNILDI_03440 0.56 -0.3 677,839 - bcsF BNILDI_03440 0.56 +1.4 677,839 - bcsF BNILDI_03440 0.56 -0.6 677,864 + bcsF BNILDI_03440 0.69 -0.6 677,940 + -0.1 677,969 - +1.5 678,039 + bcsG BNILDI_03445 0.16 -0.3 678,040 - bcsG BNILDI_03445 0.16 +0.9 678,040 - bcsG BNILDI_03445 0.16 +0.0 678,040 - bcsG BNILDI_03445 0.16 +0.3 678,192 - bcsG BNILDI_03445 0.37 +0.3 678,233 - bcsG BNILDI_03445 0.42 +0.0 678,237 - bcsG BNILDI_03445 0.43 +0.1 678,259 - bcsG BNILDI_03445 0.46 +1.4 678,262 - bcsG BNILDI_03445 0.46 -1.2 678,293 + bcsG BNILDI_03445 0.50 +0.5 678,293 + bcsG BNILDI_03445 0.50 -0.1 678,293 + bcsG BNILDI_03445 0.50 +0.4 678,294 - bcsG BNILDI_03445 0.50 -1.1 678,353 + bcsG BNILDI_03445 0.58 +1.6 678,354 - bcsG BNILDI_03445 0.59 +0.1 678,359 + bcsG BNILDI_03445 0.59 -0.3 678,371 + bcsG BNILDI_03445 0.61 -0.2 678,371 + bcsG BNILDI_03445 0.61 +0.1 678,372 - bcsG BNILDI_03445 0.61 +0.6 678,372 - bcsG BNILDI_03445 0.61 -0.3 678,375 + bcsG BNILDI_03445 0.61 +0.4 678,376 - bcsG BNILDI_03445 0.62 -0.3 678,376 - bcsG BNILDI_03445 0.62 -0.4 678,376 - bcsG BNILDI_03445 0.62 -0.6 678,432 - bcsG BNILDI_03445 0.69 -0.9 678,498 + bcsG BNILDI_03445 0.78 -0.3 678,552 + bcsG BNILDI_03445 0.85 -1.0 678,559 + bcsG BNILDI_03445 0.86 -0.7 678,559 + bcsG BNILDI_03445 0.86 -0.5 678,560 - bcsG BNILDI_03445 0.86 +0.6 678,560 - bcsG BNILDI_03445 0.86 +0.9 678,560 - bcsG BNILDI_03445 0.86 -0.2 678,561 + bcsG BNILDI_03445 0.87 -0.9 678,579 + bcsG BNILDI_03445 0.89 +0.4 678,629 + -0.6 678,668 + +0.0 678,669 - +0.1 678,669 - -0.2 678,669 - -0.1 678,669 - +0.1 678,748 + -1.0 678,749 - -1.2 678,808 - bcsG BNILDI_03450 0.13 -0.5 678,829 - bcsG BNILDI_03450 0.16 +0.2 678,838 + bcsG BNILDI_03450 0.17 -0.3 679,087 + bcsG BNILDI_03450 0.44 +0.7 679,088 - bcsG BNILDI_03450 0.44 +1.2 679,088 - bcsG BNILDI_03450 0.44 +0.2 679,088 - bcsG BNILDI_03450 0.44 +1.5 679,147 + bcsG BNILDI_03450 0.50 -0.2 679,218 + bcsG BNILDI_03450 0.58 -0.6 679,219 - bcsG BNILDI_03450 0.58 -0.3 679,280 + bcsG BNILDI_03450 0.65 -1.2 679,289 + bcsG BNILDI_03450 0.66 -0.5 679,289 + bcsG BNILDI_03450 0.66 +0.4 679,289 + bcsG BNILDI_03450 0.66 -0.3 679,312 - bcsG BNILDI_03450 0.69 +0.3 679,529 + +1.1 679,529 + +0.1 679,530 - -0.6 679,530 - -1.2 679,530 - +0.5 679,556 - -1.5 679,598 - -0.9 679,718 + BNILDI_03455 0.30 -0.5 679,718 + BNILDI_03455 0.30 +0.5 679,793 + -0.1 679,838 + +0.1 679,839 - -0.6 679,936 + BNILDI_03465 0.26 +0.1 679,991 - BNILDI_03465 0.44 -0.3 680,293 + -0.1 680,474 - +0.1
Or see this region's nucleotide sequence