Strain Fitness in Escherichia coli ECRC62 around BNILDI_03355

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttreF and yhjB are separated by 50 nucleotidesyhjB and yhjC are separated by 447 nucleotides BNILDI_03350: treF - Cytoplasmic trehalase, at 649,246 to 650,895 treF BNILDI_03355: yhjB - Putative HTH-type transcriptional regulator YhjB, at 650,946 to 651,548 yhjB BNILDI_03360: yhjC - Uncharacterized HTH-type transcriptional regulator YhjC, at 651,996 to 652,967 yhjC Position (kb) 650 651 652Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 649.961 kb on + strand, within treFat 649.992 kb on + strand, within treFat 649.992 kb on + strand, within treFat 650.050 kb on + strand, within treFat 650.225 kb on - strand, within treFat 650.314 kb on - strand, within treFat 650.446 kb on + strand, within treFat 650.513 kb on - strand, within treFat 650.651 kb on + strand, within treFat 650.651 kb on + strand, within treFat 650.652 kb on - strand, within treFat 650.677 kb on - strand, within treFat 650.683 kb on + strand, within treFat 650.684 kb on - strand, within treFat 650.746 kb on + strandat 650.776 kb on + strandat 650.871 kb on - strandat 650.894 kb on - strandat 650.958 kb on - strandat 650.961 kb on + strandat 651.071 kb on + strand, within yhjBat 651.071 kb on + strand, within yhjBat 651.072 kb on - strand, within yhjBat 651.072 kb on - strand, within yhjBat 651.091 kb on - strand, within yhjBat 651.140 kb on + strand, within yhjBat 651.272 kb on + strand, within yhjBat 651.273 kb on - strand, within yhjBat 651.293 kb on + strand, within yhjBat 651.293 kb on + strand, within yhjBat 651.398 kb on + strand, within yhjBat 651.399 kb on - strand, within yhjBat 651.402 kb on + strand, within yhjBat 651.403 kb on - strand, within yhjBat 651.403 kb on - strand, within yhjBat 651.403 kb on - strand, within yhjBat 651.435 kb on + strand, within yhjBat 651.435 kb on + strand, within yhjBat 651.479 kb on + strand, within yhjBat 651.480 kb on - strand, within yhjBat 651.480 kb on - strand, within yhjBat 651.513 kb on - strandat 651.583 kb on + strandat 651.709 kb on + strandat 651.755 kb on - strandat 651.929 kb on - strandat 652.178 kb on - strand, within yhjCat 652.260 kb on + strand, within yhjCat 652.260 kb on + strand, within yhjCat 652.261 kb on - strand, within yhjCat 652.261 kb on - strand, within yhjCat 652.348 kb on + strand, within yhjCat 652.348 kb on + strand, within yhjC

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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649,961 + treF BNILDI_03350 0.43 -3.3
649,992 + treF BNILDI_03350 0.45 -0.5
649,992 + treF BNILDI_03350 0.45 +0.1
650,050 + treF BNILDI_03350 0.49 -0.8
650,225 - treF BNILDI_03350 0.59 -0.5
650,314 - treF BNILDI_03350 0.65 +0.2
650,446 + treF BNILDI_03350 0.73 +0.4
650,513 - treF BNILDI_03350 0.77 +0.2
650,651 + treF BNILDI_03350 0.85 -0.4
650,651 + treF BNILDI_03350 0.85 +0.1
650,652 - treF BNILDI_03350 0.85 -1.0
650,677 - treF BNILDI_03350 0.87 +1.0
650,683 + treF BNILDI_03350 0.87 -0.5
650,684 - treF BNILDI_03350 0.87 +0.2
650,746 + -0.7
650,776 + +0.4
650,871 - -1.2
650,894 - -1.2
650,958 - +0.2
650,961 + -1.9
651,071 + yhjB BNILDI_03355 0.21 +0.7
651,071 + yhjB BNILDI_03355 0.21 -0.5
651,072 - yhjB BNILDI_03355 0.21 -0.6
651,072 - yhjB BNILDI_03355 0.21 -0.1
651,091 - yhjB BNILDI_03355 0.24 -0.1
651,140 + yhjB BNILDI_03355 0.32 +0.7
651,272 + yhjB BNILDI_03355 0.54 -0.3
651,273 - yhjB BNILDI_03355 0.54 +0.7
651,293 + yhjB BNILDI_03355 0.58 -0.4
651,293 + yhjB BNILDI_03355 0.58 +0.8
651,398 + yhjB BNILDI_03355 0.75 -0.5
651,399 - yhjB BNILDI_03355 0.75 +0.1
651,402 + yhjB BNILDI_03355 0.76 -0.9
651,403 - yhjB BNILDI_03355 0.76 +0.6
651,403 - yhjB BNILDI_03355 0.76 -1.1
651,403 - yhjB BNILDI_03355 0.76 -0.1
651,435 + yhjB BNILDI_03355 0.81 -0.4
651,435 + yhjB BNILDI_03355 0.81 -1.1
651,479 + yhjB BNILDI_03355 0.88 -0.7
651,480 - yhjB BNILDI_03355 0.89 +0.4
651,480 - yhjB BNILDI_03355 0.89 -0.4
651,513 - -1.3
651,583 + +0.3
651,709 + +0.4
651,755 - -0.1
651,929 - +0.6
652,178 - yhjC BNILDI_03360 0.19 -0.2
652,260 + yhjC BNILDI_03360 0.27 +0.6
652,260 + yhjC BNILDI_03360 0.27 -0.4
652,261 - yhjC BNILDI_03360 0.27 +0.9
652,261 - yhjC BNILDI_03360 0.27 +1.9
652,348 + yhjC BNILDI_03360 0.36 -0.4
652,348 + yhjC BNILDI_03360 0.36 +0.3

Or see this region's nucleotide sequence