Strain Fitness in Escherichia coli ECRC62 around BNILDI_03335

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgadW and gadX are separated by 367 nucleotidesgadX and gadB are separated by 369 nucleotides BNILDI_03325: gadW - acid resistance transcriptional activator GadW, at 643,543 to 644,271 gadW BNILDI_03335: gadX - acid resistance transcriptional activator GadX, at 644,639 to 645,463 gadX BNILDI_03340: gadB - glutamate decarboxylase, at 645,833 to 647,233 gadB Position (kb) 644 645 646Strain fitness (log2 ratio) -2 -1 0 1 2 3at 643.657 kb on - strand, within gadWat 643.659 kb on + strand, within gadWat 643.659 kb on + strand, within gadWat 643.659 kb on + strand, within gadWat 643.659 kb on + strand, within gadWat 643.660 kb on - strand, within gadWat 643.660 kb on - strand, within gadWat 643.724 kb on - strand, within gadWat 643.785 kb on - strand, within gadWat 643.785 kb on - strand, within gadWat 643.836 kb on + strand, within gadWat 643.837 kb on - strand, within gadWat 643.905 kb on + strand, within gadWat 643.935 kb on - strand, within gadWat 643.941 kb on + strand, within gadWat 643.941 kb on + strand, within gadWat 643.942 kb on - strand, within gadWat 643.942 kb on - strand, within gadWat 643.942 kb on - strand, within gadWat 644.047 kb on - strand, within gadWat 644.051 kb on - strand, within gadWat 644.051 kb on - strand, within gadWat 644.051 kb on - strand, within gadWat 644.284 kb on + strandat 644.508 kb on - strandat 644.555 kb on + strandat 644.558 kb on - strandat 644.565 kb on + strandat 644.565 kb on + strandat 644.566 kb on - strandat 644.623 kb on - strandat 644.884 kb on + strand, within gadXat 644.885 kb on - strand, within gadXat 645.007 kb on + strand, within gadXat 645.069 kb on - strand, within gadXat 645.070 kb on + strand, within gadXat 645.071 kb on - strand, within gadXat 645.305 kb on + strand, within gadXat 645.305 kb on + strand, within gadXat 645.328 kb on + strand, within gadXat 645.415 kb on - strandat 645.415 kb on - strandat 645.478 kb on + strandat 645.502 kb on - strandat 645.574 kb on + strandat 645.574 kb on + strandat 645.590 kb on - strandat 645.610 kb on + strandat 645.612 kb on + strandat 645.721 kb on - strandat 645.752 kb on - strandat 645.754 kb on - strandat 645.754 kb on - strandat 645.754 kb on - strandat 645.768 kb on + strandat 645.826 kb on + strandat 645.827 kb on - strandat 645.827 kb on - strandat 646.301 kb on - strand, within gadB

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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643,657 - gadW BNILDI_03325 0.16 +0.4
643,659 + gadW BNILDI_03325 0.16 -0.1
643,659 + gadW BNILDI_03325 0.16 -0.5
643,659 + gadW BNILDI_03325 0.16 +0.8
643,659 + gadW BNILDI_03325 0.16 -2.5
643,660 - gadW BNILDI_03325 0.16 +0.0
643,660 - gadW BNILDI_03325 0.16 -0.5
643,724 - gadW BNILDI_03325 0.25 +0.4
643,785 - gadW BNILDI_03325 0.33 -0.1
643,785 - gadW BNILDI_03325 0.33 +1.4
643,836 + gadW BNILDI_03325 0.40 -0.9
643,837 - gadW BNILDI_03325 0.40 -0.7
643,905 + gadW BNILDI_03325 0.50 -0.2
643,935 - gadW BNILDI_03325 0.54 +0.2
643,941 + gadW BNILDI_03325 0.55 -0.5
643,941 + gadW BNILDI_03325 0.55 +0.6
643,942 - gadW BNILDI_03325 0.55 -0.4
643,942 - gadW BNILDI_03325 0.55 +1.0
643,942 - gadW BNILDI_03325 0.55 +0.1
644,047 - gadW BNILDI_03325 0.69 -0.1
644,051 - gadW BNILDI_03325 0.70 -0.1
644,051 - gadW BNILDI_03325 0.70 +1.1
644,051 - gadW BNILDI_03325 0.70 -0.2
644,284 + +0.1
644,508 - +0.4
644,555 + +0.6
644,558 - -0.0
644,565 + -0.2
644,565 + +0.1
644,566 - +1.2
644,623 - +0.3
644,884 + gadX BNILDI_03335 0.30 +0.7
644,885 - gadX BNILDI_03335 0.30 +0.6
645,007 + gadX BNILDI_03335 0.45 +0.7
645,069 - gadX BNILDI_03335 0.52 -1.6
645,070 + gadX BNILDI_03335 0.52 +0.9
645,071 - gadX BNILDI_03335 0.52 +1.9
645,305 + gadX BNILDI_03335 0.81 +0.1
645,305 + gadX BNILDI_03335 0.81 -0.6
645,328 + gadX BNILDI_03335 0.84 +0.9
645,415 - -0.5
645,415 - +0.4
645,478 + +0.1
645,502 - -0.6
645,574 + -0.1
645,574 + -2.4
645,590 - -0.3
645,610 + +2.8
645,612 + +0.6
645,721 - -0.7
645,752 - +0.3
645,754 - -0.7
645,754 - +0.1
645,754 - -0.1
645,768 + +1.2
645,826 + +1.9
645,827 - -0.7
645,827 - -0.3
646,301 - gadB BNILDI_03340 0.33 +1.5

Or see this region's nucleotide sequence