Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zntA and BNILDI_03040 are separated by 101 nucleotides BNILDI_03040 and yhhQ are separated by 220 nucleotides yhhQ and dcrB are separated by 72 nucleotides
BNILDI_03035: zntA - Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA, at 586,327 to 588,525
zntA
BNILDI_03040: BNILDI_03040 - Sulfur carrier protein TusA, at 588,627 to 588,872
_03040
BNILDI_03045: yhhQ - 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguani ne transporter, at 589,093 to 589,758
yhhQ
BNILDI_03050: dcrB - phage sensitivity protein DcrB, at 589,831 to 590,388
dcrB
Position (kb) 588
589 Strain fitness (log2 ratio) -2
-1
0
1
2 at 587.963 kb on + strand, within zntA at 587.963 kb on + strand, within zntA at 587.964 kb on - strand, within zntA at 587.964 kb on - strand, within zntA at 587.968 kb on - strand, within zntA at 587.968 kb on - strand, within zntA at 587.968 kb on - strand, within zntA at 588.129 kb on + strand, within zntA at 588.140 kb on + strand, within zntA at 588.140 kb on + strand, within zntA at 588.140 kb on + strand, within zntA at 588.388 kb on - strand at 588.488 kb on + strand at 588.902 kb on + strand at 588.956 kb on + strand at 588.976 kb on + strand at 588.976 kb on + strand at 588.976 kb on + strand at 588.977 kb on - strand at 588.985 kb on - strand at 589.022 kb on + strand at 589.022 kb on + strand at 589.022 kb on + strand at 589.023 kb on - strand at 589.023 kb on - strand at 589.088 kb on - strand at 589.093 kb on - strand at 589.093 kb on - strand at 589.276 kb on - strand, within yhhQ at 589.306 kb on - strand, within yhhQ at 589.331 kb on + strand, within yhhQ at 589.342 kb on + strand, within yhhQ at 589.343 kb on - strand, within yhhQ at 589.363 kb on + strand, within yhhQ at 589.363 kb on + strand, within yhhQ at 589.364 kb on - strand, within yhhQ at 589.447 kb on + strand, within yhhQ at 589.447 kb on + strand, within yhhQ at 589.845 kb on + strand at 589.849 kb on + strand at 589.849 kb on + strand at 589.850 kb on - strand at 589.850 kb on - strand at 589.850 kb on - strand at 589.850 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 587,963 + zntA BNILDI_03035 0.74 -1.1 587,963 + zntA BNILDI_03035 0.74 +1.9 587,964 - zntA BNILDI_03035 0.74 +0.5 587,964 - zntA BNILDI_03035 0.74 -0.1 587,968 - zntA BNILDI_03035 0.75 +0.3 587,968 - zntA BNILDI_03035 0.75 +1.9 587,968 - zntA BNILDI_03035 0.75 -0.7 588,129 + zntA BNILDI_03035 0.82 -0.2 588,140 + zntA BNILDI_03035 0.82 -1.1 588,140 + zntA BNILDI_03035 0.82 -0.2 588,140 + zntA BNILDI_03035 0.82 +0.2 588,388 - -1.8 588,488 + -0.0 588,902 + -0.1 588,956 + -0.4 588,976 + +0.3 588,976 + +0.3 588,976 + +2.4 588,977 - -0.3 588,985 - +1.1 589,022 + -0.4 589,022 + -0.2 589,022 + +0.2 589,023 - +0.3 589,023 - +0.6 589,088 - +0.2 589,093 - -0.8 589,093 - -0.8 589,276 - yhhQ BNILDI_03045 0.27 +0.3 589,306 - yhhQ BNILDI_03045 0.32 +0.3 589,331 + yhhQ BNILDI_03045 0.36 +0.9 589,342 + yhhQ BNILDI_03045 0.37 +0.0 589,343 - yhhQ BNILDI_03045 0.38 +0.7 589,363 + yhhQ BNILDI_03045 0.41 +1.5 589,363 + yhhQ BNILDI_03045 0.41 +0.5 589,364 - yhhQ BNILDI_03045 0.41 -0.1 589,447 + yhhQ BNILDI_03045 0.53 -0.0 589,447 + yhhQ BNILDI_03045 0.53 -0.6 589,845 + +1.2 589,849 + +0.5 589,849 + -0.3 589,850 - -2.0 589,850 - +0.3 589,850 - -1.3 589,850 - +0.2
Or see this region's nucleotide sequence