Strain Fitness in Escherichia coli ECRC62 around BNILDI_02910

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyhhZ and yrhA overlap by 4 nucleotidesyrhA and yrhD are separated by 94 nucleotidesyrhD and yrhB are separated by 199 nucleotidesyrhB and ggt are separated by 37 nucleotides BNILDI_02895: yhhZ - Uncharacterized protein YhhZ, at 561,760 to 562,938 yhhZ BNILDI_02900: yrhA - protein YrhA, at 562,935 to 563,429 yrhA BNILDI_02905: yrhD - Protein YrhD, at 563,524 to 563,679 yrhD BNILDI_02910: yrhB - Uncharacterized protein YrhB, at 563,879 to 564,163 yrhB BNILDI_02915: ggt - gamma-glutamyltransferase, at 564,201 to 565,943 ggt Position (kb) 563 564 565Strain fitness (log2 ratio) -1 0 1 2 3at 563.786 kb on + strandat 563.879 kb on - strandat 563.884 kb on + strandat 564.117 kb on - strand, within yrhBat 564.121 kb on - strand, within yrhBat 564.203 kb on - strandat 564.217 kb on - strandat 564.250 kb on + strandat 564.250 kb on + strandat 564.275 kb on + strandat 564.662 kb on + strand, within ggtat 564.719 kb on + strand, within ggtat 564.720 kb on - strand, within ggtat 564.722 kb on - strand, within ggtat 564.780 kb on - strand, within ggtat 564.833 kb on + strand, within ggtat 564.857 kb on + strand, within ggtat 564.858 kb on - strand, within ggtat 564.858 kb on - strand, within ggtat 564.875 kb on + strand, within ggtat 564.876 kb on - strand, within ggtat 564.898 kb on - strand, within ggtat 564.925 kb on + strand, within ggtat 565.001 kb on - strand, within ggtat 565.028 kb on + strand, within ggtat 565.082 kb on - strand, within ggt

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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563,786 + +0.2
563,879 - -0.1
563,884 + +0.0
564,117 - yrhB BNILDI_02910 0.84 +0.7
564,121 - yrhB BNILDI_02910 0.85 +0.6
564,203 - +1.2
564,217 - +0.0
564,250 + -0.7
564,250 + +0.9
564,275 + -0.0
564,662 + ggt BNILDI_02915 0.26 +0.2
564,719 + ggt BNILDI_02915 0.30 -1.4
564,720 - ggt BNILDI_02915 0.30 +1.3
564,722 - ggt BNILDI_02915 0.30 -0.7
564,780 - ggt BNILDI_02915 0.33 -0.1
564,833 + ggt BNILDI_02915 0.36 +0.6
564,857 + ggt BNILDI_02915 0.38 +0.2
564,858 - ggt BNILDI_02915 0.38 -0.5
564,858 - ggt BNILDI_02915 0.38 -0.2
564,875 + ggt BNILDI_02915 0.39 +1.9
564,876 - ggt BNILDI_02915 0.39 +2.2
564,898 - ggt BNILDI_02915 0.40 -0.8
564,925 + ggt BNILDI_02915 0.42 +0.3
565,001 - ggt BNILDI_02915 0.46 +2.9
565,028 + ggt BNILDI_02915 0.47 +0.7
565,082 - ggt BNILDI_02915 0.51 +0.4

Or see this region's nucleotide sequence