Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zntR and yhdN are separated by 10 nucleotides yhdN and BNILDI_02230 are separated by 106 nucleotides BNILDI_02230 and rpoA are separated by 40 nucleotides rpoA and rpsD are separated by 25 nucleotides rpsD and rpsK are separated by 33 nucleotides
BNILDI_02220: zntR - Zn(2+)-responsive transcriptional regulator, at 435,782 to 436,207
zntR
BNILDI_02225: yhdN - Uncharacterized protein YhdN, at 436,218 to 436,586
yhdN
BNILDI_02230: BNILDI_02230 - 50S ribosomal protein L17, at 436,693 to 437,076
_02230
BNILDI_02235: rpoA - DNA-directed RNA polymerase subunit alpha, at 437,117 to 438,106
rpoA
BNILDI_02240: rpsD - 30S ribosomal protein S4, at 438,132 to 438,752
rpsD
BNILDI_02245: rpsK - 30S ribosomal protein S11, at 438,786 to 439,175
rpsK
Position (kb) 437
438
439 Strain fitness (log2 ratio) -1
0
1
2 at 436.150 kb on - strand, within zntR at 436.207 kb on + strand at 436.207 kb on + strand at 436.208 kb on - strand at 436.208 kb on - strand at 436.208 kb on - strand at 436.212 kb on - strand at 436.219 kb on + strand at 436.458 kb on + strand, within yhdN at 436.459 kb on - strand, within yhdN at 436.521 kb on - strand, within yhdN at 436.552 kb on - strand at 436.552 kb on - strand at 436.579 kb on - strand at 436.586 kb on + strand at 436.586 kb on + strand at 436.591 kb on - strand at 436.615 kb on + strand at 436.621 kb on + strand at 436.621 kb on + strand at 436.627 kb on - strand at 436.630 kb on + strand at 436.630 kb on + strand at 436.630 kb on + strand at 436.631 kb on - strand at 436.631 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 436,150 - zntR BNILDI_02220 0.86 +1.9 436,207 + +1.3 436,207 + +1.9 436,208 - -1.7 436,208 - -0.4 436,208 - -0.3 436,212 - -0.2 436,219 + +0.6 436,458 + yhdN BNILDI_02225 0.65 -0.0 436,459 - yhdN BNILDI_02225 0.65 +2.2 436,521 - yhdN BNILDI_02225 0.82 -0.3 436,552 - -1.6 436,552 - +0.9 436,579 - +0.2 436,586 + -0.7 436,586 + +0.4 436,591 - +0.9 436,615 + -0.9 436,621 + -1.4 436,621 + -0.2 436,627 - +0.1 436,630 + +0.9 436,630 + +0.8 436,630 + +0.6 436,631 - -0.0 436,631 - -1.1
Or see this region's nucleotide sequence