Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt acrF and BNILDI_02085 overlap by 144 nucleotides BNILDI_02085 and yhdV are separated by 105 nucleotides yhdV and yhdW are separated by 430 nucleotides
BNILDI_02080: acrF - multidrug efflux RND transporter permease subunit AcrF, at 412,100 to 415,204
acrF
BNILDI_02085: BNILDI_02085 - hypothetical protein, at 415,061 to 415,351
_02085
BNILDI_02090: yhdV - Uncharacterized protein YhdV, at 415,457 to 415,678
yhdV
BNILDI_02095: yhdW - Putative amino-acid ABC transporter-binding protein YhdW, at 416,109 to 417,134
yhdW
Position (kb) 415
416 Strain fitness (log2 ratio) -2
-1
0
1 at 414.464 kb on + strand, within acrF at 414.527 kb on + strand, within acrF at 414.527 kb on + strand, within acrF at 414.528 kb on - strand, within acrF at 414.665 kb on + strand, within acrF at 414.665 kb on + strand, within acrF at 414.679 kb on + strand, within acrF at 414.770 kb on + strand, within acrF at 414.872 kb on + strand, within acrF at 414.872 kb on + strand, within acrF at 414.873 kb on - strand, within acrF at 414.873 kb on - strand, within acrF at 414.877 kb on + strand, within acrF at 414.968 kb on - strand at 415.000 kb on - strand at 415.000 kb on - strand at 415.000 kb on - strand at 415.062 kb on + strand at 415.063 kb on - strand at 415.215 kb on + strand, within BNILDI_02085 at 415.306 kb on - strand, within BNILDI_02085 at 415.408 kb on + strand at 415.408 kb on + strand at 415.442 kb on + strand at 415.468 kb on - strand at 415.568 kb on - strand, within yhdV at 415.722 kb on - strand at 415.722 kb on - strand at 415.747 kb on + strand at 415.777 kb on + strand at 415.828 kb on - strand at 415.973 kb on + strand at 416.076 kb on + strand at 416.077 kb on - strand at 416.077 kb on - strand at 416.108 kb on + strand at 416.242 kb on + strand, within yhdW at 416.323 kb on + strand, within yhdW at 416.350 kb on - strand, within yhdW at 416.350 kb on - strand, within yhdW at 416.386 kb on + strand, within yhdW at 416.386 kb on + strand, within yhdW at 416.421 kb on - strand, within yhdW at 416.466 kb on - strand, within yhdW at 416.466 kb on - strand, within yhdW at 416.466 kb on - strand, within yhdW at 416.478 kb on + strand, within yhdW at 416.478 kb on + strand, within yhdW at 416.479 kb on - strand, within yhdW at 416.479 kb on - strand, within yhdW at 416.479 kb on - strand, within yhdW at 416.482 kb on - strand, within yhdW at 416.615 kb on + strand, within yhdW at 416.616 kb on - strand, within yhdW at 416.616 kb on - strand, within yhdW at 416.616 kb on - strand, within yhdW at 416.622 kb on + strand, within yhdW at 416.622 kb on + strand, within yhdW at 416.622 kb on + strand, within yhdW at 416.623 kb on - strand, within yhdW at 416.623 kb on - strand, within yhdW at 416.623 kb on - strand, within yhdW
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 414,464 + acrF BNILDI_02080 0.76 +0.4 414,527 + acrF BNILDI_02080 0.78 +0.7 414,527 + acrF BNILDI_02080 0.78 -0.9 414,528 - acrF BNILDI_02080 0.78 -0.2 414,665 + acrF BNILDI_02080 0.83 -0.5 414,665 + acrF BNILDI_02080 0.83 +1.0 414,679 + acrF BNILDI_02080 0.83 +0.4 414,770 + acrF BNILDI_02080 0.86 -0.3 414,872 + acrF BNILDI_02080 0.89 +1.1 414,872 + acrF BNILDI_02080 0.89 -0.0 414,873 - acrF BNILDI_02080 0.89 -1.0 414,873 - acrF BNILDI_02080 0.89 +1.4 414,877 + acrF BNILDI_02080 0.89 -0.3 414,968 - -0.6 415,000 - +1.3 415,000 - +0.5 415,000 - +0.1 415,062 + -1.6 415,063 - -1.4 415,215 + BNILDI_02085 0.53 -0.9 415,306 - BNILDI_02085 0.84 +0.5 415,408 + -0.3 415,408 + +1.2 415,442 + -0.2 415,468 - -0.1 415,568 - yhdV BNILDI_02090 0.50 +0.3 415,722 - +0.2 415,722 - -0.9 415,747 + +0.7 415,777 + +0.2 415,828 - +1.5 415,973 + +0.2 416,076 + -0.0 416,077 - +0.9 416,077 - -1.4 416,108 + +0.9 416,242 + yhdW BNILDI_02095 0.13 +1.0 416,323 + yhdW BNILDI_02095 0.21 +0.7 416,350 - yhdW BNILDI_02095 0.23 -1.8 416,350 - yhdW BNILDI_02095 0.23 -2.3 416,386 + yhdW BNILDI_02095 0.27 -0.6 416,386 + yhdW BNILDI_02095 0.27 -0.0 416,421 - yhdW BNILDI_02095 0.30 -0.2 416,466 - yhdW BNILDI_02095 0.35 -0.1 416,466 - yhdW BNILDI_02095 0.35 -1.2 416,466 - yhdW BNILDI_02095 0.35 +0.8 416,478 + yhdW BNILDI_02095 0.36 +0.9 416,478 + yhdW BNILDI_02095 0.36 +0.0 416,479 - yhdW BNILDI_02095 0.36 -0.6 416,479 - yhdW BNILDI_02095 0.36 +0.8 416,479 - yhdW BNILDI_02095 0.36 +0.7 416,482 - yhdW BNILDI_02095 0.36 +1.2 416,615 + yhdW BNILDI_02095 0.49 +0.7 416,616 - yhdW BNILDI_02095 0.49 -0.9 416,616 - yhdW BNILDI_02095 0.49 +0.5 416,616 - yhdW BNILDI_02095 0.49 +0.8 416,622 + yhdW BNILDI_02095 0.50 +0.1 416,622 + yhdW BNILDI_02095 0.50 -0.6 416,622 + yhdW BNILDI_02095 0.50 +0.5 416,623 - yhdW BNILDI_02095 0.50 -0.2 416,623 - yhdW BNILDI_02095 0.50 +0.1 416,623 - yhdW BNILDI_02095 0.50 -0.0
Or see this region's nucleotide sequence