Strain Fitness in Escherichia coli ECRC62 around BNILDI_01630

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntinfB and nusA are separated by 24 nucleotidesnusA and rimP are separated by 27 nucleotidesrimP and fMet_trna are separated by 206 nucleotides BNILDI_01625: infB - Translation initiation factor IF-2, at 317,863 to 320,535 infB BNILDI_01630: nusA - Transcription termination/antitermination protein NusA, at 320,560 to 322,047 nusA BNILDI_01635: rimP - ribosome maturation factor RimP, at 322,075 to 322,527 rimP BNILDI_01640: fMet_trna - tRNA-fMet(cat), at 322,734 to 322,810 _trna Position (kb) 320 321 322 323Strain fitness (log2 ratio) -1 0 1 2at 320.552 kb on - strandat 320.559 kb on - strandat 320.562 kb on - strandat 320.562 kb on - strandat 320.587 kb on - strandat 320.729 kb on - strand, within nusAat 320.767 kb on - strand, within nusAat 321.010 kb on - strand, within nusAat 322.077 kb on - strandat 322.628 kb on - strandat 322.706 kb on - strandat 322.708 kb on - strandat 322.905 kb on + strandat 322.906 kb on - strandat 322.906 kb on - strandat 323.026 kb on - strandat 323.039 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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320,552 - +0.7
320,559 - +0.3
320,562 - -1.0
320,562 - -1.5
320,587 - -0.1
320,729 - nusA BNILDI_01630 0.11 -0.4
320,767 - nusA BNILDI_01630 0.14 -1.4
321,010 - nusA BNILDI_01630 0.30 -0.7
322,077 - +0.3
322,628 - -1.2
322,706 - -1.0
322,708 - -0.9
322,905 + +1.3
322,906 - -0.4
322,906 - +1.9
323,026 - +0.2
323,039 + -0.9

Or see this region's nucleotide sequence