Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cca and bacA are separated by 162 nucleotides bacA and folB are separated by 90 nucleotides folB and plsY are separated by 104 nucleotides
BNILDI_01015: cca - fused tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/phosphatase Cca, at 195,551 to 196,789
cca
BNILDI_01020: bacA - undecaprenyl-diphosphate phosphatase, at 196,952 to 197,773
bacA
BNILDI_01025: folB - bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase, at 197,864 to 198,232
folB
BNILDI_01030: plsY - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 198,337 to 198,954
plsY
Position (kb) 196
197
198 Strain fitness (log2 ratio) -1
0
1
2 at 196.794 kb on - strand at 196.794 kb on - strand at 196.799 kb on + strand at 196.968 kb on + strand at 196.987 kb on + strand at 196.988 kb on - strand at 197.047 kb on + strand, within bacA at 197.048 kb on - strand, within bacA at 197.081 kb on - strand, within bacA at 197.081 kb on - strand, within bacA at 197.137 kb on - strand, within bacA at 197.300 kb on - strand, within bacA at 197.320 kb on + strand, within bacA at 197.404 kb on - strand, within bacA at 197.592 kb on - strand, within bacA at 197.612 kb on + strand, within bacA at 197.677 kb on + strand, within bacA at 197.678 kb on - strand, within bacA at 197.683 kb on + strand, within bacA at 197.684 kb on - strand, within bacA at 197.684 kb on - strand, within bacA at 197.738 kb on + strand at 197.777 kb on + strand at 197.777 kb on + strand at 197.790 kb on + strand at 197.790 kb on + strand at 197.791 kb on - strand at 197.838 kb on - strand at 198.287 kb on - strand at 198.336 kb on + strand at 198.336 kb on + strand at 198.337 kb on - strand at 198.337 kb on - strand at 198.476 kb on + strand, within plsY at 198.477 kb on - strand, within plsY at 198.564 kb on - strand, within plsY at 198.591 kb on - strand, within plsY at 198.740 kb on + strand, within plsY
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 196,794 - -0.7 196,794 - -0.9 196,799 + +0.9 196,968 + -0.3 196,987 + -0.6 196,988 - -0.3 197,047 + bacA BNILDI_01020 0.12 -1.2 197,048 - bacA BNILDI_01020 0.12 +0.9 197,081 - bacA BNILDI_01020 0.16 -0.8 197,081 - bacA BNILDI_01020 0.16 -0.8 197,137 - bacA BNILDI_01020 0.23 -0.2 197,300 - bacA BNILDI_01020 0.42 -0.7 197,320 + bacA BNILDI_01020 0.45 -0.9 197,404 - bacA BNILDI_01020 0.55 -0.3 197,592 - bacA BNILDI_01020 0.78 +0.4 197,612 + bacA BNILDI_01020 0.80 -0.4 197,677 + bacA BNILDI_01020 0.88 +0.6 197,678 - bacA BNILDI_01020 0.88 +1.9 197,683 + bacA BNILDI_01020 0.89 +0.3 197,684 - bacA BNILDI_01020 0.89 -0.3 197,684 - bacA BNILDI_01020 0.89 +0.3 197,738 + +0.4 197,777 + +0.4 197,777 + +0.8 197,790 + +1.0 197,790 + -1.3 197,791 - +0.2 197,838 - -0.3 198,287 - -0.4 198,336 + -0.5 198,336 + +0.9 198,337 - +0.5 198,337 - -0.7 198,476 + plsY BNILDI_01030 0.22 -0.6 198,477 - plsY BNILDI_01030 0.23 -1.3 198,564 - plsY BNILDI_01030 0.37 -0.1 198,591 - plsY BNILDI_01030 0.41 -0.2 198,740 + plsY BNILDI_01030 0.65 -0.5
Or see this region's nucleotide sequence