Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zupT and ribB are separated by 488 nucleotides ribB and ubiK are separated by 373 nucleotides ubiK and ygiL are separated by 282 nucleotides
BNILDI_00925: zupT - zinc transporter ZupT, at 177,550 to 178,323
zupT
BNILDI_00930: ribB - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 178,812 to 179,465
ribB
BNILDI_00935: ubiK - ubiquinone biosynthesis accessory factor UbiK, at 179,839 to 180,129
ubiK
BNILDI_00940: ygiL - fimbrial-like protein, at 180,412 to 180,963
ygiL
Position (kb) 178
179
180 Strain fitness (log2 ratio) -1
0
1
2 at 178.031 kb on - strand, within zupT at 178.048 kb on - strand, within zupT at 178.182 kb on + strand, within zupT at 178.183 kb on - strand, within zupT at 178.183 kb on - strand, within zupT at 178.239 kb on + strand, within zupT at 178.239 kb on + strand, within zupT at 178.240 kb on - strand, within zupT at 178.259 kb on + strand at 178.259 kb on + strand at 178.260 kb on - strand at 178.263 kb on - strand at 178.263 kb on - strand at 178.263 kb on - strand at 178.293 kb on - strand at 178.382 kb on + strand at 178.383 kb on - strand at 178.387 kb on + strand at 178.424 kb on + strand at 178.567 kb on - strand at 178.622 kb on - strand at 178.768 kb on - strand at 178.799 kb on + strand at 178.799 kb on + strand at 178.800 kb on - strand at 179.495 kb on - strand at 179.757 kb on + strand at 179.757 kb on + strand at 179.758 kb on - strand at 179.835 kb on + strand at 179.836 kb on - strand at 179.978 kb on + strand, within ubiK at 179.979 kb on - strand, within ubiK at 180.191 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 178,031 - zupT BNILDI_00925 0.62 +0.6 178,048 - zupT BNILDI_00925 0.64 -0.8 178,182 + zupT BNILDI_00925 0.82 +1.2 178,183 - zupT BNILDI_00925 0.82 -0.4 178,183 - zupT BNILDI_00925 0.82 -0.8 178,239 + zupT BNILDI_00925 0.89 -0.4 178,239 + zupT BNILDI_00925 0.89 +1.4 178,240 - zupT BNILDI_00925 0.89 +0.5 178,259 + +0.1 178,259 + -0.1 178,260 - +1.9 178,263 - +0.3 178,263 - -0.1 178,263 - +0.1 178,293 - -1.1 178,382 + -0.3 178,383 - +2.5 178,387 + -0.3 178,424 + -0.2 178,567 - +0.7 178,622 - +0.5 178,768 - -0.1 178,799 + +0.4 178,799 + -1.1 178,800 - -0.0 179,495 - -1.6 179,757 + +0.5 179,757 + -0.6 179,758 - -0.8 179,835 + -1.7 179,836 - -0.0 179,978 + ubiK BNILDI_00935 0.48 -0.5 179,979 - ubiK BNILDI_00935 0.48 +0.6 180,191 + +0.9
Or see this region's nucleotide sequence