Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnp-IS66 and tnpB are separated by 19 nucleotides tnpB and tnpA overlap by 1 nucleotides tnpA and BNILDI_00505 are separated by 68 nucleotides
BNILDI_00490: tnp-IS66 - IS66 family transposase, at 93,331 to 94,902
tnp-IS66
BNILDI_00495: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 94,922 to 95,269
tnpB
BNILDI_00500: tnpA - IS66-like element accessory protein TnpA, at 95,269 to 95,919
tnpA
BNILDI_00505: BNILDI_00505 - DUF3644 domain-containing protein, at 95,988 to 96,860
_00505
Position (kb) 94
95
96 Strain fitness (log2 ratio) -2
-1
0
1
2 at 94.161 kb on - strand, within tnp-IS66 at 94.179 kb on - strand, within tnp-IS66 at 94.259 kb on + strand, within tnp-IS66 at 94.298 kb on + strand, within tnp-IS66 at 94.298 kb on + strand, within tnp-IS66 at 94.298 kb on + strand, within tnp-IS66 at 94.299 kb on - strand, within tnp-IS66 at 94.299 kb on - strand, within tnp-IS66 at 94.449 kb on + strand, within tnp-IS66 at 94.616 kb on + strand, within tnp-IS66 at 94.616 kb on + strand, within tnp-IS66 at 94.681 kb on + strand, within tnp-IS66 at 94.734 kb on + strand, within tnp-IS66 at 94.734 kb on + strand, within tnp-IS66 at 94.785 kb on - strand at 94.785 kb on - strand at 94.817 kb on + strand at 94.834 kb on + strand at 94.926 kb on - strand at 95.108 kb on + strand, within tnpB at 95.215 kb on + strand, within tnpB at 95.243 kb on - strand at 95.265 kb on - strand at 95.265 kb on - strand at 95.265 kb on - strand at 95.298 kb on + strand at 95.299 kb on - strand at 95.309 kb on - strand at 95.391 kb on + strand, within tnpA at 95.391 kb on + strand, within tnpA at 95.391 kb on + strand, within tnpA at 95.392 kb on - strand, within tnpA at 95.392 kb on - strand, within tnpA at 95.395 kb on + strand, within tnpA at 95.408 kb on - strand, within tnpA at 95.430 kb on + strand, within tnpA at 95.431 kb on - strand, within tnpA at 95.527 kb on - strand, within tnpA at 95.616 kb on + strand, within tnpA at 95.671 kb on + strand, within tnpA at 95.733 kb on - strand, within tnpA at 95.889 kb on + strand at 95.889 kb on + strand at 95.922 kb on + strand at 95.922 kb on + strand at 95.952 kb on + strand at 95.990 kb on - strand at 96.019 kb on + strand at 96.020 kb on - strand at 96.020 kb on - strand at 96.020 kb on - strand at 96.020 kb on - strand at 96.022 kb on - strand at 96.075 kb on - strand at 96.121 kb on + strand, within BNILDI_00505 at 96.130 kb on + strand, within BNILDI_00505 at 96.146 kb on + strand, within BNILDI_00505 at 96.256 kb on - strand, within BNILDI_00505 at 96.256 kb on - strand, within BNILDI_00505
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 94,161 - tnp-IS66 BNILDI_00490 0.53 -0.1 94,179 - tnp-IS66 BNILDI_00490 0.54 +0.8 94,259 + tnp-IS66 BNILDI_00490 0.59 -0.8 94,298 + tnp-IS66 BNILDI_00490 0.62 +0.3 94,298 + tnp-IS66 BNILDI_00490 0.62 -1.1 94,298 + tnp-IS66 BNILDI_00490 0.62 -0.6 94,299 - tnp-IS66 BNILDI_00490 0.62 +0.9 94,299 - tnp-IS66 BNILDI_00490 0.62 +0.3 94,449 + tnp-IS66 BNILDI_00490 0.71 +0.7 94,616 + tnp-IS66 BNILDI_00490 0.82 -1.4 94,616 + tnp-IS66 BNILDI_00490 0.82 -0.7 94,681 + tnp-IS66 BNILDI_00490 0.86 +1.0 94,734 + tnp-IS66 BNILDI_00490 0.89 -0.9 94,734 + tnp-IS66 BNILDI_00490 0.89 -0.5 94,785 - +1.5 94,785 - +0.3 94,817 + +0.7 94,834 + -0.6 94,926 - +0.2 95,108 + tnpB BNILDI_00495 0.53 +0.6 95,215 + tnpB BNILDI_00495 0.84 +1.9 95,243 - -0.3 95,265 - -0.7 95,265 - +0.9 95,265 - +0.0 95,298 + +0.1 95,299 - -0.1 95,309 - -0.3 95,391 + tnpA BNILDI_00500 0.19 -1.3 95,391 + tnpA BNILDI_00500 0.19 +1.1 95,391 + tnpA BNILDI_00500 0.19 -0.8 95,392 - tnpA BNILDI_00500 0.19 +0.9 95,392 - tnpA BNILDI_00500 0.19 -0.3 95,395 + tnpA BNILDI_00500 0.19 -0.8 95,408 - tnpA BNILDI_00500 0.21 -0.8 95,430 + tnpA BNILDI_00500 0.25 -1.9 95,431 - tnpA BNILDI_00500 0.25 +1.0 95,527 - tnpA BNILDI_00500 0.40 +0.1 95,616 + tnpA BNILDI_00500 0.53 +0.4 95,671 + tnpA BNILDI_00500 0.62 +0.3 95,733 - tnpA BNILDI_00500 0.71 +1.9 95,889 + -0.9 95,889 + -0.5 95,922 + -1.6 95,922 + -0.7 95,952 + +0.2 95,990 - -0.6 96,019 + -0.3 96,020 - -0.5 96,020 - -0.1 96,020 - +0.4 96,020 - +0.1 96,022 - -0.5 96,075 - -0.1 96,121 + BNILDI_00505 0.15 -0.2 96,130 + BNILDI_00505 0.16 +0.3 96,146 + BNILDI_00505 0.18 -0.1 96,256 - BNILDI_00505 0.31 -0.8 96,256 - BNILDI_00505 0.31 -0.3
Or see this region's nucleotide sequence