Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnp-ISAs1 and BNILDI_00400 are separated by 353 nucleotides BNILDI_00400 and BNILDI_00405 are separated by 11 nucleotides BNILDI_00405 and tssB are separated by 830 nucleotides
BNILDI_00395: tnp-ISAs1 - ISAs1 family transposase, at 80,892 to 81,935
tnp-ISAs1
BNILDI_00400: BNILDI_00400 - DsORF-h1, at 82,289 to 82,738
_00400
BNILDI_00405: BNILDI_00405 - contractile injection system protein, VgrG/Pvc8 family, at 82,750 to 83,670
_00405
BNILDI_00410: tssB - Type VI secretion system protein TssB, at 84,501 to 85,001
tssB
Position (kb) 82
83
84 Strain fitness (log2 ratio) -1
0
1
2 at 82.290 kb on + strand at 82.729 kb on - strand at 83.108 kb on + strand, within BNILDI_00405 at 83.108 kb on + strand, within BNILDI_00405 at 83.322 kb on + strand, within BNILDI_00405 at 83.324 kb on + strand, within BNILDI_00405 at 83.346 kb on - strand, within BNILDI_00405 at 83.346 kb on - strand, within BNILDI_00405 at 83.363 kb on + strand, within BNILDI_00405 at 83.363 kb on + strand, within BNILDI_00405 at 83.364 kb on - strand, within BNILDI_00405 at 83.387 kb on + strand, within BNILDI_00405 at 83.624 kb on + strand at 83.624 kb on + strand at 83.633 kb on + strand at 83.634 kb on - strand at 84.545 kb on + strand at 84.548 kb on + strand at 84.548 kb on + strand at 84.549 kb on - strand at 84.632 kb on + strand, within tssB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 82,290 + +0.0 82,729 - +0.3 83,108 + BNILDI_00405 0.39 +0.9 83,108 + BNILDI_00405 0.39 +0.0 83,322 + BNILDI_00405 0.62 +0.3 83,324 + BNILDI_00405 0.62 -0.2 83,346 - BNILDI_00405 0.65 +0.8 83,346 - BNILDI_00405 0.65 +0.9 83,363 + BNILDI_00405 0.67 +0.2 83,363 + BNILDI_00405 0.67 +0.5 83,364 - BNILDI_00405 0.67 -0.2 83,387 + BNILDI_00405 0.69 +1.0 83,624 + -0.4 83,624 + -1.1 83,633 + +0.9 83,634 - -1.3 84,545 + -1.1 84,548 + -0.3 84,548 + -0.4 84,549 - +0.1 84,632 + tssB BNILDI_00410 0.26 +1.9
Or see this region's nucleotide sequence