Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yafL and dinJ are separated by 185 nucleotides dinJ and yafQ are separated by 2 nucleotides yafQ and dpaA are separated by 155 nucleotides
BNILDI_00315: yafL - putative endopeptidase YafL, at 67,562 to 68,335
yafL
BNILDI_00320: dinJ - type II toxin-antitoxin system antitoxin DinJ, at 68,521 to 68,781
dinJ
BNILDI_00325: yafQ - type II toxin-antitoxin system mRNA interferase toxin YafQ, at 68,784 to 69,062
yafQ
BNILDI_00330: dpaA - peptidoglycan meso-diaminopimelic acid protein amidase, at 69,218 to 69,958
dpaA
Position (kb) 68
69 Strain fitness (log2 ratio) -2
-1
0
1
2 at 67.552 kb on + strand at 67.563 kb on + strand at 67.695 kb on + strand, within yafL at 67.695 kb on + strand, within yafL at 67.696 kb on - strand, within yafL at 67.800 kb on + strand, within yafL at 67.800 kb on + strand, within yafL at 67.800 kb on + strand, within yafL at 67.800 kb on + strand, within yafL at 67.801 kb on - strand, within yafL at 67.801 kb on - strand, within yafL at 67.801 kb on - strand, within yafL at 67.801 kb on - strand, within yafL at 67.801 kb on - strand, within yafL at 67.848 kb on + strand, within yafL at 67.854 kb on + strand, within yafL at 67.855 kb on - strand, within yafL at 67.907 kb on + strand, within yafL at 67.964 kb on - strand, within yafL at 67.964 kb on - strand, within yafL at 67.964 kb on - strand, within yafL at 68.066 kb on + strand, within yafL at 68.127 kb on + strand, within yafL at 68.127 kb on + strand, within yafL at 68.128 kb on - strand, within yafL at 68.128 kb on - strand, within yafL at 68.128 kb on - strand, within yafL at 68.206 kb on - strand, within yafL at 68.218 kb on + strand, within yafL at 68.218 kb on + strand, within yafL at 68.218 kb on + strand, within yafL at 68.219 kb on - strand, within yafL at 68.376 kb on - strand at 68.440 kb on + strand at 68.514 kb on + strand at 68.586 kb on - strand, within dinJ at 68.673 kb on - strand, within dinJ at 68.690 kb on + strand, within dinJ at 68.760 kb on - strand at 68.852 kb on + strand, within yafQ at 68.875 kb on - strand, within yafQ at 68.875 kb on - strand, within yafQ at 68.891 kb on + strand, within yafQ at 68.922 kb on + strand, within yafQ at 68.997 kb on + strand, within yafQ at 69.005 kb on + strand, within yafQ at 69.085 kb on + strand at 69.111 kb on - strand at 69.152 kb on + strand at 69.152 kb on + strand at 69.169 kb on + strand at 69.170 kb on - strand at 69.200 kb on + strand at 69.201 kb on - strand at 69.210 kb on + strand at 69.211 kb on - strand at 69.217 kb on + strand at 69.224 kb on - strand at 69.235 kb on - strand at 69.293 kb on - strand, within dpaA at 69.293 kb on - strand, within dpaA at 69.320 kb on + strand, within dpaA at 69.321 kb on - strand, within dpaA at 69.322 kb on + strand, within dpaA at 69.322 kb on + strand, within dpaA at 69.322 kb on + strand, within dpaA at 69.323 kb on - strand, within dpaA at 69.350 kb on + strand, within dpaA at 69.351 kb on - strand, within dpaA at 69.443 kb on + strand, within dpaA at 69.505 kb on + strand, within dpaA at 69.518 kb on - strand, within dpaA at 69.545 kb on + strand, within dpaA at 69.556 kb on + strand, within dpaA at 69.596 kb on + strand, within dpaA at 69.647 kb on + strand, within dpaA at 69.734 kb on - strand, within dpaA at 69.734 kb on - strand, within dpaA at 69.764 kb on - strand, within dpaA at 69.779 kb on + strand, within dpaA at 69.780 kb on - strand, within dpaA at 69.780 kb on - strand, within dpaA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 67,552 + -0.4 67,563 + +1.0 67,695 + yafL BNILDI_00315 0.17 +0.0 67,695 + yafL BNILDI_00315 0.17 -0.3 67,696 - yafL BNILDI_00315 0.17 -1.3 67,800 + yafL BNILDI_00315 0.31 +0.1 67,800 + yafL BNILDI_00315 0.31 +0.3 67,800 + yafL BNILDI_00315 0.31 -0.3 67,800 + yafL BNILDI_00315 0.31 +1.2 67,801 - yafL BNILDI_00315 0.31 +0.4 67,801 - yafL BNILDI_00315 0.31 -0.4 67,801 - yafL BNILDI_00315 0.31 -0.2 67,801 - yafL BNILDI_00315 0.31 -0.3 67,801 - yafL BNILDI_00315 0.31 -0.3 67,848 + yafL BNILDI_00315 0.37 -0.1 67,854 + yafL BNILDI_00315 0.38 +0.1 67,855 - yafL BNILDI_00315 0.38 +0.4 67,907 + yafL BNILDI_00315 0.45 +1.3 67,964 - yafL BNILDI_00315 0.52 +0.5 67,964 - yafL BNILDI_00315 0.52 -0.1 67,964 - yafL BNILDI_00315 0.52 +0.2 68,066 + yafL BNILDI_00315 0.65 +1.1 68,127 + yafL BNILDI_00315 0.73 +0.9 68,127 + yafL BNILDI_00315 0.73 -0.2 68,128 - yafL BNILDI_00315 0.73 -1.5 68,128 - yafL BNILDI_00315 0.73 +1.9 68,128 - yafL BNILDI_00315 0.73 +1.9 68,206 - yafL BNILDI_00315 0.83 +0.1 68,218 + yafL BNILDI_00315 0.85 -1.8 68,218 + yafL BNILDI_00315 0.85 -0.6 68,218 + yafL BNILDI_00315 0.85 +0.3 68,219 - yafL BNILDI_00315 0.85 +0.0 68,376 - -0.6 68,440 + -0.8 68,514 + -0.3 68,586 - dinJ BNILDI_00320 0.25 -1.1 68,673 - dinJ BNILDI_00320 0.58 +1.1 68,690 + dinJ BNILDI_00320 0.65 -0.1 68,760 - +0.5 68,852 + yafQ BNILDI_00325 0.24 -0.3 68,875 - yafQ BNILDI_00325 0.33 -1.4 68,875 - yafQ BNILDI_00325 0.33 +0.9 68,891 + yafQ BNILDI_00325 0.38 -0.1 68,922 + yafQ BNILDI_00325 0.49 -0.8 68,997 + yafQ BNILDI_00325 0.76 -0.7 69,005 + yafQ BNILDI_00325 0.79 +0.0 69,085 + +0.3 69,111 - -0.8 69,152 + +0.9 69,152 + +0.5 69,169 + -2.4 69,170 - -0.6 69,200 + -0.7 69,201 - +0.3 69,210 + -0.3 69,211 - -1.1 69,217 + +1.1 69,224 - +1.0 69,235 - -0.3 69,293 - dpaA BNILDI_00330 0.10 -0.7 69,293 - dpaA BNILDI_00330 0.10 +0.6 69,320 + dpaA BNILDI_00330 0.14 -1.4 69,321 - dpaA BNILDI_00330 0.14 +0.0 69,322 + dpaA BNILDI_00330 0.14 -0.1 69,322 + dpaA BNILDI_00330 0.14 +1.3 69,322 + dpaA BNILDI_00330 0.14 +0.5 69,323 - dpaA BNILDI_00330 0.14 +0.5 69,350 + dpaA BNILDI_00330 0.18 -1.4 69,351 - dpaA BNILDI_00330 0.18 +1.4 69,443 + dpaA BNILDI_00330 0.30 -1.1 69,505 + dpaA BNILDI_00330 0.39 +0.0 69,518 - dpaA BNILDI_00330 0.40 +1.6 69,545 + dpaA BNILDI_00330 0.44 -0.3 69,556 + dpaA BNILDI_00330 0.46 +0.0 69,596 + dpaA BNILDI_00330 0.51 -0.6 69,647 + dpaA BNILDI_00330 0.58 +2.1 69,734 - dpaA BNILDI_00330 0.70 -0.9 69,734 - dpaA BNILDI_00330 0.70 +1.5 69,764 - dpaA BNILDI_00330 0.74 +0.1 69,779 + dpaA BNILDI_00330 0.76 +0.2 69,780 - dpaA BNILDI_00330 0.76 -1.3 69,780 - dpaA BNILDI_00330 0.76 -0.0
Or see this region's nucleotide sequence