Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS19235 and ABI39_RS19240 overlap by 8 nucleotides ABI39_RS19240 and ABI39_RS19245 are separated by 12 nucleotides ABI39_RS19245 and ABI39_RS19250 are separated by 7 nucleotides ABI39_RS19250 and ABI39_RS19255 are separated by 94 nucleotides
ABI39_RS19235: ABI39_RS19235 - DUF418 domain-containing protein, at 4,824,416 to 4,825,651
_RS19235
ABI39_RS19240: ABI39_RS19240 - EamA family transporter, at 4,825,644 to 4,826,555
_RS19240
ABI39_RS19245: ABI39_RS19245 - alpha/beta hydrolase, at 4,826,568 to 4,827,632
_RS19245
ABI39_RS19250: ABI39_RS19250 - dihydrofolate reductase family protein, at 4,827,640 to 4,828,317
_RS19250
ABI39_RS19255: ABI39_RS19255 - aldo/keto reductase, at 4,828,412 to 4,829,578
_RS19255
Position (kb) 4826
4827
4828 Strain fitness (log2 ratio) -1
0
1 at 4825.632 kb on - strand at 4825.717 kb on - strand at 4825.781 kb on - strand, within ABI39_RS19240 at 4825.827 kb on + strand, within ABI39_RS19240 at 4825.871 kb on - strand, within ABI39_RS19240 at 4825.894 kb on - strand, within ABI39_RS19240 at 4825.943 kb on + strand, within ABI39_RS19240 at 4825.943 kb on + strand, within ABI39_RS19240 at 4825.944 kb on - strand, within ABI39_RS19240 at 4826.037 kb on - strand, within ABI39_RS19240 at 4826.187 kb on - strand, within ABI39_RS19240 at 4826.491 kb on + strand at 4826.492 kb on - strand at 4826.570 kb on - strand at 4826.599 kb on - strand at 4826.634 kb on + strand at 4826.698 kb on + strand, within ABI39_RS19245 at 4826.774 kb on + strand, within ABI39_RS19245 at 4826.777 kb on - strand, within ABI39_RS19245 at 4826.777 kb on - strand, within ABI39_RS19245 at 4826.793 kb on - strand, within ABI39_RS19245 at 4826.876 kb on - strand, within ABI39_RS19245 at 4826.931 kb on + strand, within ABI39_RS19245 at 4827.006 kb on - strand, within ABI39_RS19245 at 4827.067 kb on + strand, within ABI39_RS19245 at 4827.068 kb on - strand, within ABI39_RS19245 at 4827.071 kb on + strand, within ABI39_RS19245 at 4827.071 kb on + strand, within ABI39_RS19245 at 4827.072 kb on - strand, within ABI39_RS19245 at 4827.072 kb on - strand, within ABI39_RS19245 at 4827.072 kb on - strand, within ABI39_RS19245 at 4827.072 kb on - strand, within ABI39_RS19245 at 4827.075 kb on - strand, within ABI39_RS19245 at 4827.075 kb on - strand, within ABI39_RS19245 at 4827.242 kb on + strand, within ABI39_RS19245 at 4827.275 kb on - strand, within ABI39_RS19245 at 4827.554 kb on - strand at 4827.669 kb on + strand at 4827.785 kb on - strand, within ABI39_RS19250 at 4828.006 kb on + strand, within ABI39_RS19250 at 4828.107 kb on + strand, within ABI39_RS19250 at 4828.137 kb on + strand, within ABI39_RS19250 at 4828.222 kb on + strand, within ABI39_RS19250 at 4828.223 kb on - strand, within ABI39_RS19250 at 4828.227 kb on - strand, within ABI39_RS19250 at 4828.307 kb on + strand at 4828.307 kb on + strand at 4828.389 kb on - strand at 4828.389 kb on - strand at 4828.403 kb on - strand at 4828.468 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 4,825,632 - +0.2 4,825,717 - +0.2 4,825,781 - ABI39_RS19240 0.15 -0.5 4,825,827 + ABI39_RS19240 0.20 +0.2 4,825,871 - ABI39_RS19240 0.25 +0.3 4,825,894 - ABI39_RS19240 0.27 +0.3 4,825,943 + ABI39_RS19240 0.33 +0.5 4,825,943 + ABI39_RS19240 0.33 -0.7 4,825,944 - ABI39_RS19240 0.33 +0.1 4,826,037 - ABI39_RS19240 0.43 +0.4 4,826,187 - ABI39_RS19240 0.60 -0.1 4,826,491 + +0.2 4,826,492 - -0.7 4,826,570 - -0.1 4,826,599 - -0.1 4,826,634 + -0.0 4,826,698 + ABI39_RS19245 0.12 -0.5 4,826,774 + ABI39_RS19245 0.19 +0.2 4,826,777 - ABI39_RS19245 0.20 -0.3 4,826,777 - ABI39_RS19245 0.20 -0.4 4,826,793 - ABI39_RS19245 0.21 -1.3 4,826,876 - ABI39_RS19245 0.29 -0.9 4,826,931 + ABI39_RS19245 0.34 -0.3 4,827,006 - ABI39_RS19245 0.41 +0.4 4,827,067 + ABI39_RS19245 0.47 -0.4 4,827,068 - ABI39_RS19245 0.47 -0.1 4,827,071 + ABI39_RS19245 0.47 -0.5 4,827,071 + ABI39_RS19245 0.47 -0.2 4,827,072 - ABI39_RS19245 0.47 -0.1 4,827,072 - ABI39_RS19245 0.47 -0.6 4,827,072 - ABI39_RS19245 0.47 +0.2 4,827,072 - ABI39_RS19245 0.47 -0.6 4,827,075 - ABI39_RS19245 0.48 -0.2 4,827,075 - ABI39_RS19245 0.48 +0.1 4,827,242 + ABI39_RS19245 0.63 +1.4 4,827,275 - ABI39_RS19245 0.66 -0.3 4,827,554 - +0.4 4,827,669 + +0.2 4,827,785 - ABI39_RS19250 0.21 -0.2 4,828,006 + ABI39_RS19250 0.54 -0.1 4,828,107 + ABI39_RS19250 0.69 +0.1 4,828,137 + ABI39_RS19250 0.73 +0.2 4,828,222 + ABI39_RS19250 0.86 -0.0 4,828,223 - ABI39_RS19250 0.86 -0.4 4,828,227 - ABI39_RS19250 0.87 +0.6 4,828,307 + -0.0 4,828,307 + +0.2 4,828,389 - -0.4 4,828,389 - +0.2 4,828,403 - -0.4 4,828,468 + -0.3
Or see this region's nucleotide sequence