Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25725

Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
1,485	+		LU632_RS25710	0.82	-2.5
1,573	+				+1.7
1,633	+				-0.2
1,633	+				+1.1
1,633	+				-0.6
1,633	+				+1.1
1,633	+				+0.2
1,633	+				-1.6
1,633	+				+0.0
1,729	-				+0.4
1,751	+				+0.4
1,815	-		LU632_RS25715	0.18	+2.0
1,982	+		LU632_RS25715	0.83	+1.7
1,982	+		LU632_RS25715	0.83	-0.3
1,982	+		LU632_RS25715	0.83	-0.1
1,983	-		LU632_RS25715	0.84	+0.9
1,985	-		LU632_RS25715	0.84	-0.6
2,072	+				+0.6
2,072	+				+0.1
2,073	-				+1.5
2,085	+				-1.1
2,086	-				+0.3
2,550	-		LU632_RS25725	0.12	+1.9
2,653	-		LU632_RS25725	0.27	-2.0
2,700	-		LU632_RS25725	0.34	-2.2
2,705	+		LU632_RS25725	0.34	-2.0
2,840	-		LU632_RS25725	0.54	-1.6
2,961	-		LU632_RS25725	0.72	-3.1
2,961	-		LU632_RS25725	0.72	-2.2
3,173	-				+2.0
3,173	-				-1.1
3,270	-				+0.9
3,276	+				+1.3
3,295	+				+0.2
3,295	+				+0.4
3,295	+				+1.4
3,296	-				+2.7
3,306	+				-1.2
3,306	+				+1.1
3,306	+				+1.2
3,306	+				+0.4
3,306	+				-2.1
3,306	+				-1.2
3,307	-				+0.9
3,310	+				-0.6
3,310	+				-0.3
3,311	-				+1.2
3,315	+				+2.4
3,337	+				-0.1
3,359	+				+0.6
3,359	+				+0.2
3,363	+				-0.5
3,363	+				-0.3
3,386	+				+0.5
3,386	+				-2.6
3,386	+				-0.6
3,386	+				-0.8
3,387	-				+0.9
3,387	-				+1.0
3,387	-				-0.8
3,387	-				+1.6
3,387	-				-1.5
3,387	-				+0.4
3,388	+				-0.3
3,388	+				-3.7
3,388	+				+0.5
3,389	-				-1.0
3,389	-				-1.8
3,389	-				+0.5
3,389	-				-1.6
3,389	-				-0.1
3,394	+				-2.5
3,394	+				+0.8
3,395	-				+0.7
3,398	+				-3.6
3,399	-				+0.9
3,530	+		LU632_RS25730	0.13	-1.6
3,703	+		LU632_RS25730	0.30	+0.1
3,703	+		LU632_RS25730	0.30	-2.0
3,725	+		LU632_RS25730	0.33	-2.9
3,725	+		LU632_RS25730	0.33	-0.9
3,725	+		LU632_RS25730	0.33	-1.1
3,725	+		LU632_RS25730	0.33	-0.4
3,726	-		LU632_RS25730	0.33	-1.4
3,726	-		LU632_RS25730	0.33	+2.9
3,726	-		LU632_RS25730	0.33	-0.2
3,726	-		LU632_RS25730	0.33	+1.2
3,726	-		LU632_RS25730	0.33	+0.4
3,749	-		LU632_RS25730	0.35	-0.1
3,772	-		LU632_RS25730	0.38	+3.6
4,121	+		LU632_RS25730	0.73	+3.5
4,122	-		LU632_RS25730	0.73	+1.2