Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25335

Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25330 and LU632_RS25335 overlap by 59 nucleotidesLU632_RS25335 and LU632_RS25340 are separated by 7 nucleotidesLU632_RS25340 and LU632_RS25345 are separated by 100 nucleotides LU632_RS25330: LU632_RS25330 - DUF5710 domain-containing protein, at 214 to 840 _RS25330 LU632_RS25335: LU632_RS25335 - hypothetical protein, at 782 to 3,604 _RS25335 LU632_RS25340: LU632_RS25340 - hypothetical protein, at 3,612 to 4,055 _RS25340 LU632_RS25345: LU632_RS25345 - DotI/IcmL family type IV secretion protein, at 4,156 to 4,776 _RS25345 Position (kb) 0 1 2 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 0.045 kb on + strandat 0.072 kb on + strandat 0.209 kb on + strandat 0.209 kb on + strandat 0.209 kb on + strandat 0.210 kb on - strandat 0.210 kb on - strandat 0.210 kb on - strandat 0.213 kb on + strandat 0.226 kb on - strandat 0.226 kb on - strandat 0.230 kb on - strandat 0.238 kb on - strandat 0.238 kb on - strandat 0.298 kb on + strand, within LU632_RS25330at 0.298 kb on + strand, within LU632_RS25330at 0.298 kb on + strand, within LU632_RS25330at 0.298 kb on + strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.310 kb on + strand, within LU632_RS25330at 0.560 kb on + strand, within LU632_RS25330at 0.560 kb on + strand, within LU632_RS25330at 0.560 kb on + strand, within LU632_RS25330at 0.560 kb on + strand, within LU632_RS25330at 0.561 kb on - strand, within LU632_RS25330at 0.561 kb on - strand, within LU632_RS25330at 0.561 kb on - strand, within LU632_RS25330at 0.562 kb on + strand, within LU632_RS25330at 0.562 kb on + strand, within LU632_RS25330at 0.598 kb on + strand, within LU632_RS25330at 0.658 kb on + strand, within LU632_RS25330at 0.658 kb on + strand, within LU632_RS25330at 0.658 kb on + strand, within LU632_RS25330at 0.659 kb on - strand, within LU632_RS25330at 0.659 kb on - strand, within LU632_RS25330at 0.659 kb on - strand, within LU632_RS25330at 0.722 kb on + strand, within LU632_RS25330at 0.722 kb on + strand, within LU632_RS25330at 0.723 kb on - strand, within LU632_RS25330at 0.723 kb on - strand, within LU632_RS25330at 0.723 kb on - strand, within LU632_RS25330at 0.809 kb on + strandat 0.810 kb on - strandat 0.857 kb on - strandat 0.861 kb on - strandat 0.861 kb on - strandat 0.861 kb on - strandat 0.883 kb on - strandat 0.883 kb on - strandat 0.887 kb on - strandat 0.887 kb on - strandat 0.917 kb on + strandat 0.917 kb on + strandat 0.918 kb on - strandat 0.918 kb on - strandat 1.032 kb on - strandat 1.050 kb on + strandat 1.051 kb on - strandat 1.256 kb on + strand, within LU632_RS25335at 1.257 kb on - strand, within LU632_RS25335at 1.334 kb on - strand, within LU632_RS25335at 1.420 kb on + strand, within LU632_RS25335at 1.517 kb on - strand, within LU632_RS25335at 1.546 kb on + strand, within LU632_RS25335at 1.546 kb on + strand, within LU632_RS25335at 1.547 kb on - strand, within LU632_RS25335at 1.547 kb on - strand, within LU632_RS25335at 1.549 kb on - strand, within LU632_RS25335at 1.549 kb on - strand, within LU632_RS25335at 1.549 kb on - strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.669 kb on - strand, within LU632_RS25335at 1.669 kb on - strand, within LU632_RS25335at 1.669 kb on - strand, within LU632_RS25335at 1.669 kb on - strand, within LU632_RS25335at 1.716 kb on + strand, within LU632_RS25335at 1.858 kb on - strand, within LU632_RS25335at 1.858 kb on - strand, within LU632_RS25335at 2.105 kb on - strand, within LU632_RS25335at 2.162 kb on + strand, within LU632_RS25335at 2.162 kb on + strand, within LU632_RS25335at 2.163 kb on - strand, within LU632_RS25335at 2.364 kb on + strand, within LU632_RS25335at 2.364 kb on + strand, within LU632_RS25335at 2.365 kb on - strand, within LU632_RS25335at 2.365 kb on - strand, within LU632_RS25335at 2.365 kb on - strand, within LU632_RS25335at 2.494 kb on - strand, within LU632_RS25335at 2.494 kb on - strand, within LU632_RS25335at 2.494 kb on - strand, within LU632_RS25335at 2.497 kb on + strand, within LU632_RS25335at 2.498 kb on - strand, within LU632_RS25335at 2.643 kb on + strand, within LU632_RS25335at 2.643 kb on + strand, within LU632_RS25335at 2.667 kb on - strand, within LU632_RS25335at 2.699 kb on + strand, within LU632_RS25335at 2.699 kb on + strand, within LU632_RS25335at 2.699 kb on + strand, within LU632_RS25335at 2.700 kb on - strand, within LU632_RS25335at 2.807 kb on + strand, within LU632_RS25335at 2.807 kb on + strand, within LU632_RS25335at 2.808 kb on - strand, within LU632_RS25335at 2.808 kb on - strand, within LU632_RS25335at 2.830 kb on + strand, within LU632_RS25335at 2.830 kb on + strand, within LU632_RS25335at 2.831 kb on - strand, within LU632_RS25335at 2.831 kb on - strand, within LU632_RS25335at 2.831 kb on - strand, within LU632_RS25335at 2.873 kb on + strand, within LU632_RS25335at 2.982 kb on - strand, within LU632_RS25335at 2.982 kb on - strand, within LU632_RS25335at 2.982 kb on - strand, within LU632_RS25335at 2.982 kb on - strand, within LU632_RS25335at 3.078 kb on - strand, within LU632_RS25335at 3.078 kb on - strand, within LU632_RS25335at 3.080 kb on - strand, within LU632_RS25335at 3.276 kb on + strand, within LU632_RS25335at 3.617 kb on + strandat 3.708 kb on - strand, within LU632_RS25340at 3.721 kb on - strand, within LU632_RS25340at 3.804 kb on - strand, within LU632_RS25340at 3.906 kb on + strand, within LU632_RS25340at 3.907 kb on - strand, within LU632_RS25340at 3.907 kb on - strand, within LU632_RS25340at 3.940 kb on - strand, within LU632_RS25340at 4.023 kb on - strandat 4.038 kb on + strandat 4.038 kb on + strandat 4.038 kb on + strandat 4.038 kb on + strandat 4.038 kb on + strandat 4.039 kb on - strandat 4.039 kb on - strandat 4.039 kb on - strandat 4.039 kb on - strandat 4.135 kb on + strandat 4.136 kb on - strandat 4.136 kb on - strandat 4.200 kb on + strandat 4.300 kb on + strand, within LU632_RS25345at 4.443 kb on - strand, within LU632_RS25345at 4.443 kb on - strand, within LU632_RS25345at 4.487 kb on - strand, within LU632_RS25345at 4.487 kb on - strand, within LU632_RS25345at 4.489 kb on + strand, within LU632_RS25345at 4.490 kb on - strand, within LU632_RS25345at 4.490 kb on - strand, within LU632_RS25345at 4.490 kb on - strand, within LU632_RS25345

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
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45 + +0.2
72 + -0.0
209 + -2.4
209 + +0.2
209 + -0.5
210 - +1.2
210 - -2.0
210 - +1.6
213 + -2.1
226 - +2.1
226 - +0.8
230 - -0.0
238 - -0.4
238 - -0.9
298 + LU632_RS25330 0.13 +0.8
298 + LU632_RS25330 0.13 +0.3
298 + LU632_RS25330 0.13 -1.8
298 + LU632_RS25330 0.13 +4.0
299 - LU632_RS25330 0.14 +1.7
299 - LU632_RS25330 0.14 -1.1
299 - LU632_RS25330 0.14 +0.3
299 - LU632_RS25330 0.14 -0.1
299 - LU632_RS25330 0.14 +0.6
299 - LU632_RS25330 0.14 -2.2
310 + LU632_RS25330 0.15 -0.9
560 + LU632_RS25330 0.55 +1.0
560 + LU632_RS25330 0.55 -1.4
560 + LU632_RS25330 0.55 +2.7
560 + LU632_RS25330 0.55 -3.1
561 - LU632_RS25330 0.55 -0.3
561 - LU632_RS25330 0.55 -2.0
561 - LU632_RS25330 0.55 +0.1
562 + LU632_RS25330 0.56 +0.6
562 + LU632_RS25330 0.56 -1.5
598 + LU632_RS25330 0.61 -0.8
658 + LU632_RS25330 0.71 +0.9
658 + LU632_RS25330 0.71 +0.4
658 + LU632_RS25330 0.71 +0.6
659 - LU632_RS25330 0.71 +0.7
659 - LU632_RS25330 0.71 -3.7
659 - LU632_RS25330 0.71 +0.7
722 + LU632_RS25330 0.81 +1.1
722 + LU632_RS25330 0.81 +0.5
723 - LU632_RS25330 0.81 +1.4
723 - LU632_RS25330 0.81 +0.2
723 - LU632_RS25330 0.81 +0.8
809 + -1.0
810 - +0.4
857 - -1.7
861 - -1.3
861 - -0.7
861 - -0.5
883 - -2.6
883 - -0.2
887 - +0.7
887 - -0.6
917 + -2.4
917 + -1.2
918 - +1.1
918 - +1.0
1,032 - +3.8
1,050 + -1.5
1,051 - +0.7
1,256 + LU632_RS25335 0.17 +0.2
1,257 - LU632_RS25335 0.17 -1.6
1,334 - LU632_RS25335 0.20 -1.5
1,420 + LU632_RS25335 0.23 -0.2
1,517 - LU632_RS25335 0.26 -0.6
1,546 + LU632_RS25335 0.27 -0.9
1,546 + LU632_RS25335 0.27 +0.9
1,547 - LU632_RS25335 0.27 +0.7
1,547 - LU632_RS25335 0.27 +3.0
1,549 - LU632_RS25335 0.27 +0.6
1,549 - LU632_RS25335 0.27 +1.1
1,549 - LU632_RS25335 0.27 +0.0
1,668 + LU632_RS25335 0.31 -0.8
1,668 + LU632_RS25335 0.31 +1.8
1,668 + LU632_RS25335 0.31 +0.3
1,668 + LU632_RS25335 0.31 +0.8
1,668 + LU632_RS25335 0.31 -1.8
1,669 - LU632_RS25335 0.31 +0.0
1,669 - LU632_RS25335 0.31 -2.2
1,669 - LU632_RS25335 0.31 -2.0
1,669 - LU632_RS25335 0.31 +1.2
1,716 + LU632_RS25335 0.33 -2.4
1,858 - LU632_RS25335 0.38 +1.1
1,858 - LU632_RS25335 0.38 +0.2
2,105 - LU632_RS25335 0.47 +0.3
2,162 + LU632_RS25335 0.49 -2.4
2,162 + LU632_RS25335 0.49 +1.0
2,163 - LU632_RS25335 0.49 +0.3
2,364 + LU632_RS25335 0.56 +0.8
2,364 + LU632_RS25335 0.56 +0.6
2,365 - LU632_RS25335 0.56 -0.3
2,365 - LU632_RS25335 0.56 +3.4
2,365 - LU632_RS25335 0.56 -1.1
2,494 - LU632_RS25335 0.61 -0.5
2,494 - LU632_RS25335 0.61 -0.7
2,494 - LU632_RS25335 0.61 +0.2
2,497 + LU632_RS25335 0.61 +0.2
2,498 - LU632_RS25335 0.61 -1.7
2,643 + LU632_RS25335 0.66 -3.4
2,643 + LU632_RS25335 0.66 -0.2
2,667 - LU632_RS25335 0.67 +1.8
2,699 + LU632_RS25335 0.68 +1.2
2,699 + LU632_RS25335 0.68 +2.3
2,699 + LU632_RS25335 0.68 -2.2
2,700 - LU632_RS25335 0.68 -1.3
2,807 + LU632_RS25335 0.72 -2.3
2,807 + LU632_RS25335 0.72 +1.3
2,808 - LU632_RS25335 0.72 -1.2
2,808 - LU632_RS25335 0.72 +1.5
2,830 + LU632_RS25335 0.73 +0.7
2,830 + LU632_RS25335 0.73 +0.8
2,831 - LU632_RS25335 0.73 -0.1
2,831 - LU632_RS25335 0.73 -2.5
2,831 - LU632_RS25335 0.73 -1.4
2,873 + LU632_RS25335 0.74 -0.2
2,982 - LU632_RS25335 0.78 -3.0
2,982 - LU632_RS25335 0.78 +0.0
2,982 - LU632_RS25335 0.78 +0.4
2,982 - LU632_RS25335 0.78 +0.6
3,078 - LU632_RS25335 0.81 -0.5
3,078 - LU632_RS25335 0.81 +3.8
3,080 - LU632_RS25335 0.81 -2.4
3,276 + LU632_RS25335 0.88 +0.2
3,617 + +0.9
3,708 - LU632_RS25340 0.22 -1.4
3,721 - LU632_RS25340 0.25 +0.2
3,804 - LU632_RS25340 0.43 +2.0
3,906 + LU632_RS25340 0.66 +0.8
3,907 - LU632_RS25340 0.66 +0.5
3,907 - LU632_RS25340 0.66 +0.0
3,940 - LU632_RS25340 0.74 -2.1
4,023 - -1.7
4,038 + -2.3
4,038 + -0.0
4,038 + -3.2
4,038 + -1.2
4,038 + -1.2
4,039 - -1.7
4,039 - -0.2
4,039 - -0.1
4,039 - -0.8
4,135 + -0.5
4,136 - +0.8
4,136 - +0.5
4,200 + +0.4
4,300 + LU632_RS25345 0.23 +0.9
4,443 - LU632_RS25345 0.46 +1.1
4,443 - LU632_RS25345 0.46 -1.1
4,487 - LU632_RS25345 0.53 +0.5
4,487 - LU632_RS25345 0.53 -1.0
4,489 + LU632_RS25345 0.54 -0.9
4,490 - LU632_RS25345 0.54 -0.6
4,490 - LU632_RS25345 0.54 +0.6
4,490 - LU632_RS25345 0.54 -0.2

Or see this region's nucleotide sequence