Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25275

Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
4,806,359	+	gspL	LU632_RS25265	0.59	-2.3
4,806,360	-	gspL	LU632_RS25265	0.59	-1.5
4,806,360	-	gspL	LU632_RS25265	0.59	-0.0
4,806,452	+	gspL	LU632_RS25265	0.67	-0.3
4,806,511	+	gspL	LU632_RS25265	0.72	+0.1
4,806,512	-	gspL	LU632_RS25265	0.72	+1.5
4,806,512	-	gspL	LU632_RS25265	0.72	+1.7
4,806,512	-	gspL	LU632_RS25265	0.72	+0.8
4,806,513	+	gspL	LU632_RS25265	0.72	-0.5
4,806,513	+	gspL	LU632_RS25265	0.72	+0.3
4,806,513	+	gspL	LU632_RS25265	0.72	+1.0
4,806,513	+	gspL	LU632_RS25265	0.72	-0.6
4,806,514	-	gspL	LU632_RS25265	0.72	-2.0
4,806,515	+	gspL	LU632_RS25265	0.72	-2.0
4,806,515	+	gspL	LU632_RS25265	0.72	-1.9
4,806,515	+	gspL	LU632_RS25265	0.72	+0.3
4,806,515	+	gspL	LU632_RS25265	0.72	+0.5
4,806,516	-	gspL	LU632_RS25265	0.72	+0.7
4,806,516	-	gspL	LU632_RS25265	0.72	-0.8
4,806,516	-	gspL	LU632_RS25265	0.72	+0.7
4,806,516	-	gspL	LU632_RS25265	0.72	-0.1
4,806,516	-	gspL	LU632_RS25265	0.72	+0.9
4,806,516	-	gspL	LU632_RS25265	0.72	+0.9
4,806,516	-	gspL	LU632_RS25265	0.72	-0.1
4,806,516	-	gspL	LU632_RS25265	0.72	+0.7
4,806,516	-	gspL	LU632_RS25265	0.72	+0.9
4,806,590	+	gspL	LU632_RS25265	0.78	-2.6
4,806,592	+	gspL	LU632_RS25265	0.78	+0.1
4,806,592	+	gspL	LU632_RS25265	0.78	+0.0
4,806,593	-	gspL	LU632_RS25265	0.78	+0.1
4,806,593	-	gspL	LU632_RS25265	0.78	-0.6
4,806,782	-				-1.5
4,806,813	-				+0.3
4,806,845	+				+0.9
4,806,855	-				-2.6
4,806,894	+		LU632_RS25270	0.12	+0.5
4,807,035	+		LU632_RS25270	0.43	-0.7
4,807,035	+		LU632_RS25270	0.43	-0.5
4,807,128	+		LU632_RS25270	0.64	-0.8
4,807,285	+				+0.9
4,807,285	+				+1.0
4,807,286	-				-0.5
4,807,300	-				-1.0
4,807,300	-				+0.7
4,807,413	-		LU632_RS25275	0.16	-0.5
4,807,462	+		LU632_RS25275	0.23	+0.6
4,807,471	-		LU632_RS25275	0.24	+0.1
4,807,471	-		LU632_RS25275	0.24	-2.3
4,807,483	-		LU632_RS25275	0.25	-0.7
4,807,483	-		LU632_RS25275	0.25	+1.7
4,807,623	+		LU632_RS25275	0.43	-0.9
4,807,623	+		LU632_RS25275	0.43	-0.0
4,807,623	+		LU632_RS25275	0.43	+0.9
4,807,623	+		LU632_RS25275	0.43	+1.8
4,807,624	-		LU632_RS25275	0.44	-0.2
4,807,631	-		LU632_RS25275	0.44	-2.0
4,807,631	-		LU632_RS25275	0.44	+0.5
4,807,828	+		LU632_RS25275	0.70	-0.3
4,807,922	+		LU632_RS25275	0.82	+1.1
4,808,039	-				-0.7
4,808,039	-				-1.9
4,808,039	-				-2.2
4,808,039	-				-0.6
4,808,081	-				+0.1
4,808,081	-				+0.8
4,808,103	+				-0.4
4,808,104	-				+0.2
4,808,104	-				-0.6
4,808,104	-				+0.3
4,808,107	+				-0.7
4,808,107	+				-0.3
4,808,107	+				+1.3
4,808,107	+				+1.7
4,808,298	+	gspS	LU632_RS25280	0.37	+0.3
4,808,421	-	gspS	LU632_RS25280	0.78	+1.1
4,808,421	-	gspS	LU632_RS25280	0.78	-3.0
4,808,421	-	gspS	LU632_RS25280	0.78	-2.3
4,808,421	-	gspS	LU632_RS25280	0.78	-1.0
4,808,443	-	gspS	LU632_RS25280	0.85	-1.6
4,808,540	+		LU632_RS25285	0.17	+0.3
4,808,540	+		LU632_RS25285	0.17	-0.3
4,808,608	-		LU632_RS25285	0.44	+0.4
4,808,608	-		LU632_RS25285	0.44	+1.3
4,808,744	-				+0.9
4,808,746	+				+0.1
4,808,746	+				+1.7
4,808,747	-				+0.4
4,808,750	-				+0.3
4,808,767	+				+0.4
4,808,767	+				-0.1
4,808,768	-				-1.5
4,808,775	+				-0.6
4,808,776	-				+2.1
4,808,808	+				+0.8
4,808,808	+				-0.5
4,808,812	+				-0.9
4,808,812	+				-0.3
4,808,813	-				+0.4
4,808,813	-				+0.2
4,808,875	-				-0.9
4,808,875	-				-0.5
4,808,879	+				-0.9
4,808,879	+				-2.0
4,808,879	+				-2.6
4,808,880	-				-1.0
4,808,882	-				-0.3
4,808,882	-				-0.6
4,808,888	+				-1.3
4,808,888	+				-0.4
4,809,041	-		LU632_RS25290	0.21	-0.4