Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemC and hemD overlap by 4 nucleotides hemD and hemX are separated by 24 nucleotides hemX and hemY are separated by 2 nucleotides
LU632_RS24160: hemC - hydroxymethylbilane synthase, at 4,609,507 to 4,610,448
hemC
LU632_RS24165: hemD - uroporphyrinogen-III synthase, at 4,610,445 to 4,611,185
hemD
LU632_RS24170: hemX - uroporphyrinogen-III C-methyltransferase, at 4,611,210 to 4,612,346
hemX
LU632_RS24175: hemY - protoheme IX biogenesis protein HemY, at 4,612,349 to 4,613,539
hemY
Position (kb) 4611
4612
4613 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4611.183 kb on + strand at 4611.201 kb on + strand at 4611.335 kb on + strand, within hemX at 4611.336 kb on - strand, within hemX at 4611.365 kb on + strand, within hemX at 4611.366 kb on - strand, within hemX at 4611.366 kb on - strand, within hemX at 4611.375 kb on - strand, within hemX at 4611.641 kb on + strand, within hemX at 4611.641 kb on + strand, within hemX at 4611.642 kb on - strand, within hemX at 4611.642 kb on - strand, within hemX at 4611.642 kb on - strand, within hemX at 4611.751 kb on + strand, within hemX at 4611.796 kb on - strand, within hemX at 4611.827 kb on - strand, within hemX at 4611.830 kb on + strand, within hemX at 4611.917 kb on - strand, within hemX at 4611.917 kb on - strand, within hemX at 4611.953 kb on + strand, within hemX at 4611.954 kb on - strand, within hemX at 4611.971 kb on + strand, within hemX at 4611.971 kb on + strand, within hemX at 4612.019 kb on + strand, within hemX at 4612.020 kb on - strand, within hemX at 4612.105 kb on - strand, within hemX at 4612.115 kb on + strand, within hemX at 4612.115 kb on + strand, within hemX at 4612.180 kb on - strand, within hemX at 4612.221 kb on - strand, within hemX at 4612.354 kb on + strand at 4612.361 kb on - strand at 4612.361 kb on - strand at 4612.366 kb on - strand at 4612.428 kb on - strand at 4612.486 kb on + strand, within hemY at 4612.624 kb on - strand, within hemY at 4612.709 kb on + strand, within hemY at 4612.710 kb on - strand, within hemY at 4612.831 kb on + strand, within hemY at 4612.937 kb on + strand, within hemY at 4613.028 kb on + strand, within hemY at 4613.167 kb on + strand, within hemY at 4613.168 kb on - strand, within hemY at 4613.339 kb on + strand, within hemY
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2) remove 4,611,183 + +2.7 4,611,201 + -2.3 4,611,335 + hemX LU632_RS24170 0.11 -1.3 4,611,336 - hemX LU632_RS24170 0.11 -1.6 4,611,365 + hemX LU632_RS24170 0.14 -0.5 4,611,366 - hemX LU632_RS24170 0.14 +0.1 4,611,366 - hemX LU632_RS24170 0.14 -1.9 4,611,375 - hemX LU632_RS24170 0.15 -0.6 4,611,641 + hemX LU632_RS24170 0.38 -1.5 4,611,641 + hemX LU632_RS24170 0.38 -0.9 4,611,642 - hemX LU632_RS24170 0.38 +1.5 4,611,642 - hemX LU632_RS24170 0.38 -1.1 4,611,642 - hemX LU632_RS24170 0.38 -1.7 4,611,751 + hemX LU632_RS24170 0.48 -1.6 4,611,796 - hemX LU632_RS24170 0.52 -1.1 4,611,827 - hemX LU632_RS24170 0.54 +0.3 4,611,830 + hemX LU632_RS24170 0.55 -0.6 4,611,917 - hemX LU632_RS24170 0.62 -1.0 4,611,917 - hemX LU632_RS24170 0.62 -1.6 4,611,953 + hemX LU632_RS24170 0.65 -1.1 4,611,954 - hemX LU632_RS24170 0.65 +0.4 4,611,971 + hemX LU632_RS24170 0.67 -1.2 4,611,971 + hemX LU632_RS24170 0.67 -1.1 4,612,019 + hemX LU632_RS24170 0.71 +0.1 4,612,020 - hemX LU632_RS24170 0.71 -3.2 4,612,105 - hemX LU632_RS24170 0.79 -2.9 4,612,115 + hemX LU632_RS24170 0.80 -0.3 4,612,115 + hemX LU632_RS24170 0.80 -2.3 4,612,180 - hemX LU632_RS24170 0.85 -3.1 4,612,221 - hemX LU632_RS24170 0.89 -1.7 4,612,354 + +0.2 4,612,361 - -2.0 4,612,361 - -1.1 4,612,366 - -0.9 4,612,428 - -2.8 4,612,486 + hemY LU632_RS24175 0.12 -1.7 4,612,624 - hemY LU632_RS24175 0.23 +1.7 4,612,709 + hemY LU632_RS24175 0.30 -1.2 4,612,710 - hemY LU632_RS24175 0.30 -1.9 4,612,831 + hemY LU632_RS24175 0.40 -1.8 4,612,937 + hemY LU632_RS24175 0.49 -1.6 4,613,028 + hemY LU632_RS24175 0.57 -0.2 4,613,167 + hemY LU632_RS24175 0.69 -0.8 4,613,168 - hemY LU632_RS24175 0.69 -2.3 4,613,339 + hemY LU632_RS24175 0.83 +0.5
Or see this region's nucleotide sequence