Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22915 and hslR are separated by 130 nucleotides hslR and hslO are separated by 22 nucleotides hslO and pckA are separated by 339 nucleotides
LU632_RS22915: LU632_RS22915 - intracellular growth attenuator family protein, at 4,363,325 to 4,365,463
_RS22915
LU632_RS22920: hslR - ribosome-associated heat shock protein Hsp15, at 4,365,594 to 4,365,995
hslR
LU632_RS22925: hslO - Hsp33 family molecular chaperone HslO, at 4,366,018 to 4,366,896
hslO
LU632_RS22930: pckA - phosphoenolpyruvate carboxykinase (ATP), at 4,367,236 to 4,368,849
pckA
Position (kb) 4366
4367 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4365.409 kb on + strand at 4365.476 kb on + strand at 4365.476 kb on + strand at 4365.482 kb on - strand at 4365.523 kb on - strand at 4365.567 kb on + strand at 4365.568 kb on - strand at 4365.568 kb on - strand at 4365.654 kb on + strand, within hslR at 4365.705 kb on + strand, within hslR at 4365.705 kb on + strand, within hslR at 4365.705 kb on + strand, within hslR at 4365.705 kb on + strand, within hslR at 4365.705 kb on + strand, within hslR at 4365.739 kb on + strand, within hslR at 4365.739 kb on + strand, within hslR at 4365.847 kb on - strand, within hslR at 4365.847 kb on - strand, within hslR at 4366.018 kb on - strand at 4366.060 kb on + strand at 4366.060 kb on + strand at 4366.060 kb on + strand at 4366.223 kb on + strand, within hslO at 4366.444 kb on + strand, within hslO at 4366.445 kb on - strand, within hslO at 4366.445 kb on - strand, within hslO at 4366.483 kb on - strand, within hslO at 4366.620 kb on - strand, within hslO at 4366.640 kb on + strand, within hslO at 4366.641 kb on - strand, within hslO at 4366.739 kb on + strand, within hslO at 4366.964 kb on - strand at 4367.117 kb on - strand at 4367.117 kb on - strand at 4367.232 kb on + strand at 4367.233 kb on - strand at 4367.233 kb on - strand at 4367.233 kb on - strand at 4367.233 kb on - strand at 4367.235 kb on - strand at 4367.433 kb on + strand, within pckA at 4367.433 kb on + strand, within pckA at 4367.433 kb on + strand, within pckA at 4367.433 kb on + strand, within pckA at 4367.433 kb on + strand, within pckA at 4367.434 kb on - strand, within pckA at 4367.437 kb on + strand, within pckA at 4367.437 kb on + strand, within pckA at 4367.604 kb on + strand, within pckA at 4367.806 kb on - strand, within pckA at 4367.810 kb on + strand, within pckA at 4367.887 kb on + strand, within pckA at 4367.887 kb on + strand, within pckA at 4367.887 kb on + strand, within pckA at 4367.888 kb on - strand, within pckA at 4367.888 kb on - strand, within pckA
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2) remove 4,365,409 + -0.7 4,365,476 + +0.8 4,365,476 + -0.4 4,365,482 - +0.8 4,365,523 - +1.2 4,365,567 + -0.3 4,365,568 - +0.6 4,365,568 - -2.3 4,365,654 + hslR LU632_RS22920 0.15 -0.9 4,365,705 + hslR LU632_RS22920 0.28 -2.6 4,365,705 + hslR LU632_RS22920 0.28 +0.5 4,365,705 + hslR LU632_RS22920 0.28 +0.2 4,365,705 + hslR LU632_RS22920 0.28 +1.7 4,365,705 + hslR LU632_RS22920 0.28 +0.4 4,365,739 + hslR LU632_RS22920 0.36 +0.4 4,365,739 + hslR LU632_RS22920 0.36 +2.0 4,365,847 - hslR LU632_RS22920 0.63 -3.5 4,365,847 - hslR LU632_RS22920 0.63 +1.7 4,366,018 - -1.3 4,366,060 + -2.0 4,366,060 + +0.3 4,366,060 + -0.2 4,366,223 + hslO LU632_RS22925 0.23 +0.0 4,366,444 + hslO LU632_RS22925 0.48 +0.4 4,366,445 - hslO LU632_RS22925 0.49 -0.2 4,366,445 - hslO LU632_RS22925 0.49 -3.3 4,366,483 - hslO LU632_RS22925 0.53 +0.9 4,366,620 - hslO LU632_RS22925 0.68 +0.1 4,366,640 + hslO LU632_RS22925 0.71 -1.1 4,366,641 - hslO LU632_RS22925 0.71 +0.3 4,366,739 + hslO LU632_RS22925 0.82 -0.5 4,366,964 - -2.0 4,367,117 - +0.0 4,367,117 - -2.6 4,367,232 + -0.4 4,367,233 - +1.6 4,367,233 - -2.7 4,367,233 - -2.0 4,367,233 - +0.0 4,367,235 - +1.3 4,367,433 + pckA LU632_RS22930 0.12 -0.6 4,367,433 + pckA LU632_RS22930 0.12 +0.0 4,367,433 + pckA LU632_RS22930 0.12 +0.1 4,367,433 + pckA LU632_RS22930 0.12 -0.8 4,367,433 + pckA LU632_RS22930 0.12 -0.6 4,367,434 - pckA LU632_RS22930 0.12 -1.2 4,367,437 + pckA LU632_RS22930 0.12 -1.6 4,367,437 + pckA LU632_RS22930 0.12 -0.4 4,367,604 + pckA LU632_RS22930 0.23 +0.7 4,367,806 - pckA LU632_RS22930 0.35 -1.4 4,367,810 + pckA LU632_RS22930 0.36 -0.6 4,367,887 + pckA LU632_RS22930 0.40 +0.2 4,367,887 + pckA LU632_RS22930 0.40 -2.2 4,367,887 + pckA LU632_RS22930 0.40 -1.5 4,367,888 - pckA LU632_RS22930 0.40 +1.1 4,367,888 - pckA LU632_RS22930 0.40 -1.6
Or see this region's nucleotide sequence