Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nudE and LU632_RS22915 are separated by 404 nucleotides LU632_RS22915 and hslR are separated by 130 nucleotides hslR and hslO are separated by 22 nucleotides
LU632_RS22910: nudE - ADP compounds hydrolase NudE, at 4,362,354 to 4,362,920
nudE
LU632_RS22915: LU632_RS22915 - intracellular growth attenuator family protein, at 4,363,325 to 4,365,463
_RS22915
LU632_RS22920: hslR - ribosome-associated heat shock protein Hsp15, at 4,365,594 to 4,365,995
hslR
LU632_RS22925: hslO - Hsp33 family molecular chaperone HslO, at 4,366,018 to 4,366,896
hslO
Position (kb) 4363
4364
4365
4366 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4362.417 kb on - strand, within nudE at 4362.417 kb on - strand, within nudE at 4362.461 kb on + strand, within nudE at 4362.524 kb on - strand, within nudE at 4362.524 kb on - strand, within nudE at 4362.525 kb on + strand, within nudE at 4362.526 kb on - strand, within nudE at 4362.566 kb on - strand, within nudE at 4362.566 kb on - strand, within nudE at 4362.745 kb on + strand, within nudE at 4362.805 kb on + strand, within nudE at 4362.806 kb on - strand, within nudE at 4362.807 kb on + strand, within nudE at 4362.807 kb on + strand, within nudE at 4362.808 kb on - strand, within nudE at 4362.808 kb on - strand, within nudE at 4362.808 kb on - strand, within nudE at 4362.808 kb on - strand, within nudE at 4362.808 kb on - strand, within nudE at 4362.808 kb on - strand, within nudE at 4362.888 kb on - strand at 4362.920 kb on + strand at 4362.933 kb on + strand at 4362.934 kb on - strand at 4362.944 kb on - strand at 4362.953 kb on - strand at 4362.973 kb on + strand at 4362.986 kb on + strand at 4363.045 kb on - strand at 4363.112 kb on - strand at 4363.112 kb on - strand at 4363.118 kb on - strand at 4363.152 kb on - strand at 4363.174 kb on - strand at 4363.220 kb on + strand at 4363.221 kb on - strand at 4363.293 kb on + strand at 4365.409 kb on + strand at 4365.476 kb on + strand at 4365.476 kb on + strand at 4365.482 kb on - strand at 4365.523 kb on - strand at 4365.567 kb on + strand at 4365.568 kb on - strand at 4365.568 kb on - strand at 4365.654 kb on + strand, within hslR at 4365.705 kb on + strand, within hslR at 4365.705 kb on + strand, within hslR at 4365.705 kb on + strand, within hslR at 4365.705 kb on + strand, within hslR at 4365.705 kb on + strand, within hslR at 4365.739 kb on + strand, within hslR at 4365.739 kb on + strand, within hslR at 4365.847 kb on - strand, within hslR at 4365.847 kb on - strand, within hslR at 4366.018 kb on - strand at 4366.060 kb on + strand at 4366.060 kb on + strand at 4366.060 kb on + strand at 4366.223 kb on + strand, within hslO at 4366.444 kb on + strand, within hslO at 4366.445 kb on - strand, within hslO at 4366.445 kb on - strand, within hslO
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2) remove 4,362,417 - nudE LU632_RS22910 0.11 -0.0 4,362,417 - nudE LU632_RS22910 0.11 -0.3 4,362,461 + nudE LU632_RS22910 0.19 +0.3 4,362,524 - nudE LU632_RS22910 0.30 -1.2 4,362,524 - nudE LU632_RS22910 0.30 +0.8 4,362,525 + nudE LU632_RS22910 0.30 -0.4 4,362,526 - nudE LU632_RS22910 0.30 +0.3 4,362,566 - nudE LU632_RS22910 0.37 +0.7 4,362,566 - nudE LU632_RS22910 0.37 +0.4 4,362,745 + nudE LU632_RS22910 0.69 +0.6 4,362,805 + nudE LU632_RS22910 0.80 +0.2 4,362,806 - nudE LU632_RS22910 0.80 -0.2 4,362,807 + nudE LU632_RS22910 0.80 +0.8 4,362,807 + nudE LU632_RS22910 0.80 +0.3 4,362,808 - nudE LU632_RS22910 0.80 -0.3 4,362,808 - nudE LU632_RS22910 0.80 +0.2 4,362,808 - nudE LU632_RS22910 0.80 +0.5 4,362,808 - nudE LU632_RS22910 0.80 +0.7 4,362,808 - nudE LU632_RS22910 0.80 +0.3 4,362,808 - nudE LU632_RS22910 0.80 +0.3 4,362,888 - +0.2 4,362,920 + +0.7 4,362,933 + +0.4 4,362,934 - -1.1 4,362,944 - -0.2 4,362,953 - +1.2 4,362,973 + +0.3 4,362,986 + +1.4 4,363,045 - -0.1 4,363,112 - -1.3 4,363,112 - -0.1 4,363,118 - -0.1 4,363,152 - -0.3 4,363,174 - -0.4 4,363,220 + -0.6 4,363,221 - -1.2 4,363,293 + -0.3 4,365,409 + -0.7 4,365,476 + +0.8 4,365,476 + -0.4 4,365,482 - +0.8 4,365,523 - +1.2 4,365,567 + -0.3 4,365,568 - +0.6 4,365,568 - -2.3 4,365,654 + hslR LU632_RS22920 0.15 -0.9 4,365,705 + hslR LU632_RS22920 0.28 -2.6 4,365,705 + hslR LU632_RS22920 0.28 +0.5 4,365,705 + hslR LU632_RS22920 0.28 +0.2 4,365,705 + hslR LU632_RS22920 0.28 +1.7 4,365,705 + hslR LU632_RS22920 0.28 +0.4 4,365,739 + hslR LU632_RS22920 0.36 +0.4 4,365,739 + hslR LU632_RS22920 0.36 +2.0 4,365,847 - hslR LU632_RS22920 0.63 -3.5 4,365,847 - hslR LU632_RS22920 0.63 +1.7 4,366,018 - -1.3 4,366,060 + -2.0 4,366,060 + +0.3 4,366,060 + -0.2 4,366,223 + hslO LU632_RS22925 0.23 +0.0 4,366,444 + hslO LU632_RS22925 0.48 +0.4 4,366,445 - hslO LU632_RS22925 0.49 -0.2 4,366,445 - hslO LU632_RS22925 0.49 -3.3
Or see this region's nucleotide sequence