Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS21830 and tnpA are separated by 213 nucleotides tnpA and pfkA are separated by 153 nucleotides pfkA and fieF are separated by 212 nucleotides
LU632_RS21830: LU632_RS21830 - sulfate ABC transporter substrate-binding protein, at 4,170,576 to 4,171,568
_RS21830
LU632_RS21835: tnpA - IS200/IS605 family transposase, at 4,171,782 to 4,172,192
tnpA
LU632_RS21840: pfkA - 6-phosphofructokinase, at 4,172,346 to 4,173,308
pfkA
LU632_RS21845: fieF - CDF family cation-efflux transporter FieF, at 4,173,521 to 4,174,414
fieF
Position (kb) 4172
4173
4174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4171.355 kb on + strand, within LU632_RS21830 at 4171.428 kb on - strand, within LU632_RS21830 at 4171.429 kb on + strand, within LU632_RS21830 at 4171.429 kb on + strand, within LU632_RS21830 at 4171.430 kb on - strand, within LU632_RS21830 at 4171.430 kb on - strand, within LU632_RS21830 at 4171.451 kb on + strand, within LU632_RS21830 at 4171.452 kb on - strand, within LU632_RS21830 at 4171.452 kb on - strand, within LU632_RS21830 at 4171.452 kb on - strand, within LU632_RS21830 at 4171.452 kb on - strand, within LU632_RS21830 at 4171.452 kb on - strand, within LU632_RS21830 at 4171.452 kb on - strand, within LU632_RS21830 at 4171.453 kb on + strand, within LU632_RS21830 at 4171.463 kb on - strand, within LU632_RS21830 at 4171.562 kb on + strand at 4171.563 kb on - strand at 4171.563 kb on - strand at 4173.404 kb on + strand at 4173.405 kb on - strand at 4173.408 kb on - strand at 4173.408 kb on - strand at 4173.408 kb on - strand at 4173.408 kb on - strand at 4173.408 kb on - strand at 4173.408 kb on - strand at 4173.408 kb on - strand at 4173.409 kb on + strand at 4173.409 kb on + strand at 4173.410 kb on - strand at 4173.506 kb on - strand at 4173.523 kb on - strand at 4173.529 kb on + strand at 4173.640 kb on - strand, within fieF at 4173.650 kb on + strand, within fieF at 4173.840 kb on + strand, within fieF at 4173.841 kb on - strand, within fieF at 4174.056 kb on - strand, within fieF at 4174.110 kb on - strand, within fieF at 4174.110 kb on - strand, within fieF at 4174.110 kb on - strand, within fieF at 4174.110 kb on - strand, within fieF at 4174.147 kb on + strand, within fieF at 4174.148 kb on - strand, within fieF at 4174.249 kb on + strand, within fieF at 4174.250 kb on - strand, within fieF at 4174.271 kb on + strand, within fieF at 4174.272 kb on - strand, within fieF at 4174.272 kb on - strand, within fieF at 4174.272 kb on - strand, within fieF at 4174.272 kb on - strand, within fieF
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2) remove 4,171,355 + LU632_RS21830 0.78 -1.1 4,171,428 - LU632_RS21830 0.86 -2.4 4,171,429 + LU632_RS21830 0.86 -3.2 4,171,429 + LU632_RS21830 0.86 -2.7 4,171,430 - LU632_RS21830 0.86 +0.9 4,171,430 - LU632_RS21830 0.86 -0.9 4,171,451 + LU632_RS21830 0.88 -1.0 4,171,452 - LU632_RS21830 0.88 -0.4 4,171,452 - LU632_RS21830 0.88 -1.5 4,171,452 - LU632_RS21830 0.88 -2.0 4,171,452 - LU632_RS21830 0.88 +0.8 4,171,452 - LU632_RS21830 0.88 -0.0 4,171,452 - LU632_RS21830 0.88 +2.4 4,171,453 + LU632_RS21830 0.88 +1.2 4,171,463 - LU632_RS21830 0.89 -0.0 4,171,562 + +0.7 4,171,563 - +1.3 4,171,563 - +0.9 4,173,404 + -2.3 4,173,405 - +1.5 4,173,408 - +0.4 4,173,408 - +0.1 4,173,408 - +0.1 4,173,408 - +0.4 4,173,408 - +0.8 4,173,408 - +0.2 4,173,408 - +0.4 4,173,409 + -0.0 4,173,409 + +0.6 4,173,410 - -0.6 4,173,506 - +3.7 4,173,523 - -0.7 4,173,529 + +2.9 4,173,640 - fieF LU632_RS21845 0.13 +0.3 4,173,650 + fieF LU632_RS21845 0.14 +1.2 4,173,840 + fieF LU632_RS21845 0.36 -1.1 4,173,841 - fieF LU632_RS21845 0.36 +1.2 4,174,056 - fieF LU632_RS21845 0.60 -1.2 4,174,110 - fieF LU632_RS21845 0.66 +0.1 4,174,110 - fieF LU632_RS21845 0.66 +3.3 4,174,110 - fieF LU632_RS21845 0.66 +1.3 4,174,110 - fieF LU632_RS21845 0.66 +0.7 4,174,147 + fieF LU632_RS21845 0.70 +1.6 4,174,148 - fieF LU632_RS21845 0.70 +0.3 4,174,249 + fieF LU632_RS21845 0.81 -1.1 4,174,250 - fieF LU632_RS21845 0.82 -0.1 4,174,271 + fieF LU632_RS21845 0.84 +0.3 4,174,272 - fieF LU632_RS21845 0.84 -2.1 4,174,272 - fieF LU632_RS21845 0.84 -0.7 4,174,272 - fieF LU632_RS21845 0.84 -0.7 4,174,272 - fieF LU632_RS21845 0.84 +0.4
Or see this region's nucleotide sequence