Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19575

Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
3,710,499	+		LU632_RS19570	0.19	-1.9
3,710,549	+		LU632_RS19570	0.28	+0.3
3,710,554	-		LU632_RS19570	0.29	-0.3
3,710,614	-		LU632_RS19570	0.41	+0.4
3,710,614	-		LU632_RS19570	0.41	+2.2
3,710,699	-		LU632_RS19570	0.58	+2.2
3,710,714	+		LU632_RS19570	0.61	-0.4
3,710,715	-		LU632_RS19570	0.61	+0.5
3,710,860	-		LU632_RS19570	0.90	+1.3
3,710,862	+				-1.4
3,710,862	+				-1.4
3,710,863	-				+0.5
3,710,909	+				-1.0
3,710,914	+				-0.2
3,710,914	+				-0.6
3,710,915	-				+0.1
3,710,964	-				+0.8
3,710,964	-				-1.0
3,711,079	-				-0.9
3,711,079	-				-1.7
3,711,079	-				-0.8
3,711,079	-				+2.6
3,711,082	+				+0.3
3,711,083	-				-1.0
3,711,208	+				+0.1
3,711,209	-				-0.6
3,711,221	+				+0.8
3,711,222	-				-2.6
3,711,246	+				-0.5
3,711,305	-				+0.3
3,712,637	+				+0.2
3,712,638	-				-0.2
3,712,638	-				-0.2
3,712,659	+				+0.6
3,712,683	+				-1.7
3,712,684	-				+1.5
3,712,686	+				+1.6
3,712,734	+				+1.9
3,712,737	+				-2.6
3,712,737	+				+4.7
3,712,738	-				+1.2
3,712,800	+	fabR	LU632_RS19580	0.18	+4.0
3,712,847	-	fabR	LU632_RS19580	0.25	+3.2
3,713,027	-	fabR	LU632_RS19580	0.54	+1.2
3,713,053	+	fabR	LU632_RS19580	0.58	-2.7
3,713,053	+	fabR	LU632_RS19580	0.58	+2.2
3,713,054	-	fabR	LU632_RS19580	0.58	+2.7
3,713,117	+	fabR	LU632_RS19580	0.68	+5.2
3,713,118	-	fabR	LU632_RS19580	0.68	+2.1
3,713,354	-				+2.1
3,713,355	+				+2.2
3,713,356	-				-0.7
3,713,372	+				+1.3
3,713,378	-				-1.5
3,713,411	-				-4.2
3,713,422	+				+1.6
3,713,423	-				+0.2
3,713,434	-				+1.6
3,713,495	+				+0.0
3,713,499	+				+0.6
3,713,499	+				+0.6
3,713,500	-				-2.8
3,713,500	-				-3.4
3,713,506	+				-2.0
3,713,507	-				-3.9
3,713,507	-				-3.1
3,713,507	-				-5.2