Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18155

Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
3,430,980	-				+0.6
3,430,985	-				+1.0
3,431,002	+				-0.2
3,431,002	+				+0.6
3,431,003	-				+0.1
3,431,278	-		LU632_RS18150	0.33	-0.0
3,431,464	+		LU632_RS18150	0.55	+0.7
3,431,464	+		LU632_RS18150	0.55	+0.1
3,431,464	+		LU632_RS18150	0.55	+2.2
3,431,464	+		LU632_RS18150	0.55	-1.7
3,431,464	+		LU632_RS18150	0.55	-0.8
3,431,466	+		LU632_RS18150	0.55	-0.4
3,431,467	-		LU632_RS18150	0.55	+0.3
3,431,506	+		LU632_RS18150	0.60	-0.1
3,431,507	-		LU632_RS18150	0.60	+0.4
3,431,507	-		LU632_RS18150	0.60	-1.0
3,431,507	-		LU632_RS18150	0.60	+1.6
3,431,507	-		LU632_RS18150	0.60	-1.6
3,431,557	+		LU632_RS18150	0.66	-0.9
3,431,624	+		LU632_RS18150	0.74	+0.5
3,431,689	+		LU632_RS18150	0.82	-0.3
3,431,729	+		LU632_RS18150	0.86	+1.3
3,431,743	-		LU632_RS18150	0.88	+0.4
3,431,746	+		LU632_RS18150	0.89	-0.1
3,431,746	+		LU632_RS18150	0.89	+0.0
3,431,747	-		LU632_RS18150	0.89	-1.1
3,431,747	-		LU632_RS18150	0.89	-1.0
3,431,750	+		LU632_RS18150	0.89	+0.6
3,431,750	+		LU632_RS18150	0.89	+0.1
3,431,750	+		LU632_RS18150	0.89	+1.0
3,433,273	+				+1.5
3,433,358	+		LU632_RS18165	0.23	+1.4
3,433,358	+		LU632_RS18165	0.23	-2.0
3,433,394	+		LU632_RS18165	0.34	+1.2
3,433,394	+		LU632_RS18165	0.34	+0.2
3,433,395	-		LU632_RS18165	0.35	-0.1
3,433,574	+		LU632_RS18165	0.88	-0.1
3,433,574	+		LU632_RS18165	0.88	+1.3
3,433,575	-		LU632_RS18165	0.89	+0.8
3,433,575	-		LU632_RS18165	0.89	+0.7
3,433,611	-				-0.3
3,433,696	+				+1.0
3,433,748	+				-2.5
3,433,748	+				-0.8
3,433,749	-				-2.9
3,433,751	-				+1.2
3,433,801	+	rsmS	LU632_RS18170	0.18	-1.5
3,433,801	+	rsmS	LU632_RS18170	0.18	+0.9
3,433,819	+	rsmS	LU632_RS18170	0.29	-0.1
3,433,819	+	rsmS	LU632_RS18170	0.29	-1.9
3,433,820	-	rsmS	LU632_RS18170	0.30	+1.3
3,433,894	-	rsmS	LU632_RS18170	0.78	+0.8